Browse Element(s) Details


Os.53519.1.S1_at

Description gb:AK073054.1
DB_XREF= gi:32983077
TID=Os.53519.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005M04, full insert sequence.
FL= gb:AK073054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0499011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein
LOC_Os11g05010Os.7649.1.S1_at11/1111+2164071..2167034heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53519.1.S1_at--589--7911Chr11:2142495..2142519 (25 bp)
GGTTGCTCTCAATTCTTGGCATCAT
LOC_Os11g04990
Os.53519.1.S1_at--831--5451Chr11:2143501..2143525 (25 bp)
GAACGAGTTAGGACCTTCATCGAAG
LOC_Os11g04990
Os.53519.1.S1_at--476--4311Chr11:2143514..2143538 (25 bp)
CCTTCATCGAAGACACTAGTGGTAA
LOC_Os11g04990
Os.53519.1.S1_at--97--8691Chr11:2143557..2143581 (25 bp)
TGTCCAGGACCCATTTCAGAGATTG
LOC_Os11g04990
Os.53519.1.S1_at--750--6051Chr11:2143575..2143599 (25 bp)
GAGATTGCTTTTGCACGGTGTATGC
LOC_Os11g04990
Os.53519.1.S1_at--151--3351Chr11:2143588..2143698 (25 bp)
CACGGTGTATGCGAGTTCTATAATG
LOC_Os11g04990
Os.53519.1.S1_at--985--1031Chr11:2143775..2143799 (25 bp)
AGGTGCTCCCTCCAGAATCACATTG
LOC_Os11g04990
Os.53519.1.S1_at--1128--5231Chr11:2143789..2143813 (25 bp)
GAATCACATTGGTTAGCTTCCTAAG
LOC_Os11g04990
Os.53519.1.S1_at--144--2851Chr11:2143824..2143848 (25 bp)
AAGTCCCATTAACATGTGCCGTGTA
LOC_Os11g04990
Os.53519.1.S1_at--549--3011Chr11:2143927..2143951 (25 bp)
AATGCAAGATTGGTCACTGCCTCAC
LOC_Os11g04990
Os.53519.1.S1_at--593--1991Chr11:2143942..2143966 (25 bp)
ACTGCCTCACTGATCGTGAGTCGTG
LOC_Os11g04990
Target Sequence 
GGTTGCTCTCAATTCTTGGCATCATATAGATCGTCAAACAAGAGAAGCCATAAAGAGAAATTTCCTCCCAGATCTTCTTG
AAATATACGAAGAACGAGTTAGGACCTTCATCGAAGACACTAGTGGTAAAGATATGCTTGTACTGAATGTCCAGGACCCA
TTTCAGAGATTGCTTTTGCACGGTGTATGCGAGTTCTATAATGTATCATCTACAACCACGACTACCGTAAGAGATGGAAA
GCTGTGTAAAACGACAGCAATCAAGAAGAGATCAGGCACAGGTGCTCCCTCCAGAATCACATTGGTTAGCTTCCTAAGGA
TGAAGAAAAAGTCCCATTAACATGTGCCGTGTATTGGCAAAACATGCCGATTTAGGTTCTGTTTAGGATGTACACATGTA
AATTATCGATATTATCATCTTAACATATTTGAATGCAAGATTGGTCACTGCCTCACTGATCGTGAGTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis