Browse Element(s) Details


Os.7649.1.S1_at

Description gb:AK121700.1
DB_XREF= gi:37991323
TID=Os.7649.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7649 (NCBI UniGene Cluster)
UG_TITLE=Microsatellite 28CAC sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073F21, full insert sequence.
FL= gb:AK121700.1 gb:AK105759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0501011/11heavy metal-associated domain containing protein, expressed
LOC_Os12g050407/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein
LOC_Os11g05010Os.7649.1.S1_at11/1111+2164071..2167034heavy metal-associated domain containing protein, expressed
LOC_Os11g05020Os.57198.1.S1_at11/1111+2172999..2173577expressed protein
LOC_Os11g05020OsAffx.22046.2.S1_s_at2/1111+2172999..2173577expressed protein
LOC_Os11g05030OsAffx.10490.1.S1_at10/1111+2175591..2179079retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7649.1.S1_at--643--5971Chr11:2166525..2166549 (25 bp)
GAGAACCCGAACAGCTGCTCGGTGA
LOC_Os11g05010
Os.7649.1.S1_at--1013--9092Chr12:2195150..2195174 (25 bp)
TGCTCGGTGATGTGAGGTCTCCAGT
LOC_Os12g05040
Os.7649.1.S1_at--1116--1011Chr11:2166554..2166578 (25 bp)
AGGTCTCCAGTGTCCGGATTGCTTT
LOC_Os11g05010
Os.7649.1.S1_at--523--9111Chr11:2166593..2166617 (25 bp)
TGCTGCTGCTCATTTTGTTGTTCAA
LOC_Os11g05010
Os.7649.1.S1_at--501--5572Chr12:2195232..2195252 (21 bp)
GAAAGTGAACCAACCAGGAGTCTGA
LOC_Os12g05040
Os.7649.1.S1_at--988--5372Chr12:2195259..2195283 (25 bp)
GAAGAAGCTCATCAGGTCACAGGTG
LOC_Os12g05040
Os.7649.1.S1_at--1071--6332Chr12:2194864..2195333 (25 bp)
GATGCTCTCAGGATCAGTCAACCAG
LOC_Os12g05040
Os.7649.1.S1_at--862--10472Chr12:2195399..2195423 (25 bp)
TTACTTAGCTCGTTTTCACCTTTCT
LOC_Os12g05040
Os.7649.1.S1_at--840--8052Chr12:2195430..2195454 (25 bp)
GGAGAACTCAACTTCCTTGAAGGCG
LOC_Os12g05040
Os.7649.1.S1_at--680--8612Chr12:2195534..2195557 (24 bp)
TGGTGGTTTCCTTCTTGCTCCATAA
LOC_Os12g05040
Os.7649.1.S1_at--170--10811Chr11:2167010..2167034 (25 bp)
TTGTTTGTGCCTTTGTGACTGTGAC
LOC_Os11g05010
Target Sequence 
GAGAACCCGAACAGCTGCTCGGTGATGTGAGGTCTCCAGTGTCCGGATTGCTTTCTTCCTCCTCCTGTTGCTGCTGCTCA
TTTTGTTGTTCAAGAAAGTGAACCAACCAGGAGTCTGAGGAAGAAGCTCATCAGGTCACAGGTGATCGCCATCATGATGG
TTGAGAGATGCTCTCAGGATCAGTCAACCAGTATACACCATGGGAAATGAGTCCCATNTAGATCGCTCTTCTTTTTTTCT
TCTTTTTCTTTTTTCTTTTTTACTTAGCTCGTTTTCACCTTTCTTTTAAAGGAGAACTCAACTTCCTTGAAGGCGAAGGT
AGGTATAGTAATTATCTATAGTTTTTCATAAGAGATGATGATGATGATGGTGCTTTATAATTCGAGAAGGAAGGTGGTGG
TGGTGGTTTCCTTCTTGCTCCATAAGGTGTTGTGGTGATGCATGGTNGATGAACAATGTGCANAAGCNAAATGTGTTGCC
NATGTTTGTTTGTGCCTTTGTGACTGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis