Browse Element(s) Details


OsAffx.10490.1.S1_at

Description gb:NM_184716.1
DB_XREF= gi:34896521
GEN=OSJNBa0053G10.11
TID=OsAffx.10490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0053G10.11), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0503010/11retrotransposon protein, putative, unclassified
LOC_Os03g3554010/11retrotransposon protein, putative, unclassified
LOC_Os03g1332010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein
LOC_Os11g05010Os.7649.1.S1_at11/1111+2164071..2167034heavy metal-associated domain containing protein, expressed
LOC_Os11g05020Os.57198.1.S1_at11/1111+2172999..2173577expressed protein
LOC_Os11g05020OsAffx.22046.2.S1_s_at2/1111+2172999..2173577expressed protein
LOC_Os11g05030OsAffx.10490.1.S1_at10/1111+2175591..2179079retrotransposon protein, putative, unclassified
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10490.1.S1_at--1014--814Chr11:2177192..2177216 (25 bp)
ATGGTCTTTTCTCCAACAAACTCTC
LOC_Os11g05030
OsAffx.10490.1.S1_at--119--553Chr11:2177347..2177371 (25 bp)
ATCCGATGTCGCCAGTACTATTTAA
LOC_Os11g05030
OsAffx.10490.1.S1_at--963--1613Chr11:2177390..2177414 (25 bp)
AGCGATTCTCATTGCTAGAGCCAAA
LOC_Os11g05030
OsAffx.10490.1.S1_at--156--6933Chr11:2177427..2177451 (25 bp)
GTAGAGGGTGTTATCCCACACCTGA
LOC_Os11g05030
OsAffx.10490.1.S1_at--460--993Chr11:2177455..2177479 (25 bp)
AGGATGGCCTGTCGATACTCCAATA
LOC_Os11g05030
OsAffx.10490.1.S1_at--906--3091NONE
AATATGCGGATGATACGGCCTCAGG
NONE
OsAffx.10490.1.S1_at--762--7094Chr11:2178486..2178510 (25 bp)
GTCAAATCGATGTATGCTGCACTAA
LOC_Os11g05030
OsAffx.10490.1.S1_at--784--4376Chr11:2178947..2178971 (25 bp)
CCAATGGGCGAAGCTGCAACGGCAT
LOC_Os11g05030
OsAffx.10490.1.S1_at--652--1936Chr11:2178965..2178989 (25 bp)
ACGGCATGAGGATCTGCGTTCACAG
LOC_Os11g05030
OsAffx.10490.1.S1_at--33--10517Chr11:2178983..2179007 (25 bp)
TTCACAGTTGATCGCGGCATCGCAA
LOC_Os11g05030
OsAffx.10490.1.S1_at--737--8277Chr11:2178998..2179022 (25 bp)
GGCATCGCAACATCTTGAGTCATCA
LOC_Os11g05030
Target Sequence 
ATGGTCTTTTCTCCAACAAACTCTCAGAATGAAAGGGTTTTCACATAAATGGTGCAATTGGGTGGAGAAGTTTACTCAAG
GGGGTAATGTCAGTATAAAGGTGAATGATCAAGTTGGTAATTATTTCCAATCCAAAAAGGGCTTGAGGCAGGAGGATCCG
ATGTCGCCAGTACTATTTAATATAGTTGTCGACATGTTAGCGATTCTCATTGCTAGAGCCAAAAACGCTGACCGCGTAGA
GGGTGTTATCCCACACCTGATTCAGGATGGCCTGTCGATACTCCAATATGCGGATGATACGGCCTCAGGAAATTTTACTG
TCAAATCGATGTATGCTGCACTAATCAGTAATGGTATTAGAGTTTCACAGGATATTTGGCAAATTAAGGTACTATTCAGG
GGTACGCATTGGTTACGCCAATGGGCGAAGCTGCAACGGCATGAGGATCTGCGTTCACAGTTGATCGCGGCATCGCAACA
TCTTGAGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis