Browse Element(s) Details


Os.9392.1.S1_at

Description gb:AK071762.1
DB_XREF= gi:32981785
TID=Os.9392.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109H06, full insert sequence.
FL= gb:AK104445.1 gb:AK071762.1 gb:AK119185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0505011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05030OsAffx.10490.1.S1_at10/1111+2175591..2179079retrotransposon protein, putative, unclassified
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9392.1.S1_at--236--2231Chr11:2200598..2200622 (25 bp)
ACAAGGTGACTGCTGTTCCTGCAAA
LOC_Os11g05050
Os.9392.1.S1_at--287--1351Chr11:2200567..2200591 (25 bp)
AGAGATCTGTGGTGCAACCTTCAAG
LOC_Os11g05050
Os.9392.1.S1_at--705--9731Chr11:2200386..2200407 (22 bp)
TCAAGGTTGAGAGCGCCACTGCAAT
LOC_Os11g05050
Os.9392.1.S1_at--666--9691Chr11:2200359..2200383 (25 bp)
TCACAGCTCTGCACTAGGATGATGT
LOC_Os11g05050
Os.9392.1.S1_at--845--6291Chr11:2200342..2200366 (25 bp)
GATGATGTTTCGGTGTCCGGTCGTT
LOC_Os11g05050
Os.9392.1.S1_at--433--3571Chr11:2200298..2200322 (25 bp)
CATAGTTGCAACTGATCTGTATCAT
LOC_Os11g05050
Os.9392.1.S1_at--1124--2411Chr11:2200265..2200289 (25 bp)
AAAAGAGAAGTACTGCCTGCATGGC
LOC_Os11g05050
Os.9392.1.S1_at--861--3491Chr11:2200246..2200270 (25 bp)
CATGGCAAGTGCTTCAGTGTTCTGG
LOC_Os11g05050
Os.9392.1.S1_at--11--6731Chr11:2200228..2200252 (25 bp)
GTTCTGGGTGTGTAGTATGATCTCT
LOC_Os11g05050
Os.9392.1.S1_at--48--10131Chr11:2200213..2200237 (25 bp)
TATGATCTCTGTACCTTTGTTGTTC
LOC_Os11g05050
Os.9392.1.S1_at--404--5271Chr11:2200182..2200206 (25 bp)
GAATGAACTCCAGGCCGGCTGTGAT
LOC_Os11g05050
Target Sequence 
ACAAGGTGACTGCTGTTCCTGCAAATGAAGAAGAGATCTGTGGTGCAACCTTCAAGGTTGAGAGCGCCACTGCAATCCTC
ACAGCTCTGCACTAGGATGATGTTTCGGTGTCCGGTCGTTGTNNNNNNNNNNNNNNNNNNNACATGGTGGTGGTGTAACA
TAGTTGCAACTGATCTGTATCATCTTTTCATAAAAGAGAAGTACTGCCTGCATGGCAAGTGCTTCAGTGTTCTGGGTGTG
TAGTATGATCTCTGTACCTTTGTTGTTCAAGCAGGAATGAACTCCAGGCCGGCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis