Browse Element(s) Details


OsAffx.7001.1.S1_at

Description tigr:9639.m00424
TID=OsAffx.7001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumcalcium exchanger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0507011/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7001.1.S1_at--1147--10171Chr11:2214382..2214406 (25 bp)
TATTTCTTCTCCCTCAAAGTCGTTT
LOC_Os11g05070
OsAffx.7001.1.S1_at--86--491Chr11:2214353..2214377 (25 bp)
ATCTGGTCCGTGGTGCTTTTCGTGA
LOC_Os11g05070
OsAffx.7001.1.S1_at--123--10391Chr11:2214337..2214361 (25 bp)
TTTTCGTGAGCATTTCTTTAGCCCT
LOC_Os11g05070
OsAffx.7001.1.S1_at--444--8551Chr11:2214213..2214237 (25 bp)
TGGAGAGCTCCTGAACTGCCTTGCA
LOC_Os11g05070
OsAffx.7001.1.S1_at--298--4451Chr11:2214196..2214220 (25 bp)
GCCTTGCAGCAATCGGAGTCATTAT
LOC_Os11g05070
OsAffx.7001.1.S1_at--9--1571Chr11:2214159..2214183 (25 bp)
AGCTATACTTGGCATGACGGTCTTG
LOC_Os11g05070
OsAffx.7001.1.S1_at--533--8631Chr11:2214118..2214142 (25 bp)
TGGGTGACCTCGTTGCTGATGTAGC
LOC_Os11g05070
OsAffx.7001.1.S1_at--184--4771Chr11:2214055..2214079 (25 bp)
GCTGCTTTGCTGGTCCAATGTTCAA
LOC_Os11g05070
OsAffx.7001.1.S1_at--840--8111Chr11:2214020..2214044 (25 bp)
GGACTGGGAACTGCACTTGTAATAC
LOC_Os11g05070
OsAffx.7001.1.S1_at--407--191Chr11:2213928..2213952 (25 bp)
ATTTCTTCTTTTGAGCCTGATGGGC
LOC_Os11g05070
OsAffx.7001.1.S1_at--733--8871Chr11:2213911..2213935 (25 bp)
TGATGGGCACCCTGTTGATGGTCAC
LOC_Os11g05070
Target Sequence 
TATTTCTTCTCCCTCAAAGTCGTTTCCCCATCTGGTCCGTGGTGCTTTTCGTGAGCATTTCTTTAGCCCTGTCCCACTTC
ATTTTTGAGAAAGAAGCCCCAATAACTGAAAACATTGCAAGCACCACAATTTCCTTTGTAATGAGTGTCTTCTGGATCTC
AACCATGGCTGGAGAGCTCCTGAACTGCCTTGCAGCAATCGGAGTCATTATGGATTTCCCTCCAGCTATACTTGGCATGA
CGGTCTTGGCTTGGGGGAATTCGGTGGGTGACCTCGTTGCTGATGTAGCTTTGGCAAAGTCTGGCCAGCCGACAATAGCC
ATTGCTGGCTGCTTTGCTGGTCCAATGTTCAATATGCTGGTTGGACTGGGAACTGCACTTGTAATACAAACAGCCAGGGT
GTACCCCAAAGCTTATGTACTCGAATTCCATGTTGGAATTGTTGTTGCATTTGTATTTCTTCTTTTGAGCCTGATGGGCA
CCCTGTTGATGGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis