Browse Element(s) Details


Os.11606.1.S1_at

Description gb:AK061668.1
DB_XREF= gi:32971686
TID=Os.11606.1
CNT=72
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F07, full insert sequence.
FL= gb:AK061668.1 gb:AK099650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0511011/11pyruvate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11606.1.S1_at--405--5691Chr11:2236135..2236159 (25 bp)
GACTAATTGCCAAGTACAGGCCCAC
LOC_Os11g05110
Os.11606.1.S1_at--521--1591Chr11:2235552..2235575 (24 bp)
AGCTGAATCGACCAGCGCTACCAAT
LOC_Os11g05110
Os.11606.1.S1_at--416--3051Chr11:2235547..2235571 (25 bp)
AATCGACCAGCGCTACCAATGAGTC
LOC_Os11g05110
Os.11606.1.S1_at--1115--1711Chr11:2235542..2235566 (25 bp)
ACCAGCGCTACCAATGAGTCAGTTT
LOC_Os11g05110
Os.11606.1.S1_at--996--4571Chr11:2235538..2235562 (25 bp)
GCGCTACCAATGAGTCAGTTTTGAA
LOC_Os11g05110
Os.11606.1.S1_at--622--3191Chr11:2235531..2235555 (25 bp)
CAATGAGTCAGTTTTGAAGGTTGCT
LOC_Os11g05110
Os.11606.1.S1_at--358--9091Chr11:2235510..2235534 (25 bp)
TGCTCTTGACCATGGCAAAGCTTCC
LOC_Os11g05110
Os.11606.1.S1_at--296--3611Chr11:2235506..2235530 (25 bp)
CTTGACCATGGCAAAGCTTCCGGTG
LOC_Os11g05110
Os.11606.1.S1_at--597--6651Chr11:2235381..2235405 (25 bp)
GTTGATGATACTACGGCAAGTCATG
LOC_Os11g05110
Os.11606.1.S1_at--240--10531Chr11:2235303..2235327 (25 bp)
TTCCTATATAGGCTTTCCAATGAGC
LOC_Os11g05110
Os.11606.1.S1_at--407--10191Chr11:2235299..2235323 (25 bp)
TATATAGGCTTTCCAATGAGCAGTT
LOC_Os11g05110
Target Sequence 
GACTAATTGCCAAGTACAGGCCCACCATGCCTGTTCTATCTGTTGTCATTCCTCGTCTGAAAACAANCCAACTGAGGTGG
AGTTTCACTGGCGCATTTGAAGCAAGACAATCACTCATAGTTAGAGGTCTCTTTCCGATGCTTGCTGATCCTCGCCATCC
AGCTGAATCGACCAGCGCTACCAATGAGTCAGTTTTGAAGGTTGCTCTTGACCATGGCAAAGCTTCCGGTGTGATCAAGT
CGCATGATCGCGTTGTTGTCTGCCAGAAAGTGGGTGATTCCTCGGTTGTGAAGATCATTGAGCTGGACGATTAGACGACC
AGCTTGTGCTTGTTGATGATACTACGGCAAGTCATGGTTTGCCAGATTTTGACTAGGCCAAAAACGATGCTTCTTGGCTA
TATGTATAATTCCTATATAGGCTTTCCAATGAGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis