Browse Element(s) Details


OsAffx.30823.1.S1_at

Description tigr:9639.m00423
TID=OsAffx.30823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0506010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30823.1.S1_at--789--8431Chr11:2210120..2210144 (25 bp)
GGCCTTCTACCATGACGATCCGCAG
LOC_Os11g05060
OsAffx.30823.1.S1_at--648--10571Chr11:2210119..2210140 (22 bp)
TTCTACCATGACGATCCGCAGGATA
LOC_Os11g05060
OsAffx.30823.1.S1_at--1029--6371NONE
GATCCGCAGGATAATTTCAGTGGCT
NONE
OsAffx.30823.1.S1_at--411--7951Chr11:2208977..2209001 (25 bp)
GGATAATTTCAGTGGCTGTCATTCT
LOC_Os11g05060
OsAffx.30823.1.S1_at--441--3131Chr11:2208973..2208997 (25 bp)
AATTTCAGTGGCTGTCATTCTCATG
LOC_Os11g05060
OsAffx.30823.1.S1_at--1073--10531Chr11:2208970..2208994 (25 bp)
TTCAGTGGCTGTCATTCTCATGAAA
LOC_Os11g05060
OsAffx.30823.1.S1_at--49--7551Chr11:2208966..2208990 (25 bp)
GTGGCTGTCATTCTCATGAAAGGGA
LOC_Os11g05060
OsAffx.30823.1.S1_at--313--7131Chr11:2208960..2208984 (25 bp)
GTCATTCTCATGAAAGGGAAAGGGT
LOC_Os11g05060
OsAffx.30823.1.S1_at--254--3091Chr11:2208929..2208953 (25 bp)
AATAATGTTTGATTCCTTTTCACAA
LOC_Os11g05060
OsAffx.30823.1.S1_at--997--5231Chr11:2208919..2208943 (25 bp)
GATTCCTTTTCACAAATTACTACTA
LOC_Os11g05060
OsAffx.30823.1.S1_at--1010--10052Chr03:4481974..4482337 (25 bp)
TAGTAGTACTAGCATAACATATTTA
NONE
Target Sequence 
GGCCTTCTACCATGACGATCCGCAGGATAATTTCAGTGGCTGTCATTCTCATGAAAGGGAAAGGGTGAAAACAATAATGT
TTGATTCCTTTTCACAAATTACTACTAGTAGTACTAGCATAACATATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis