Browse Element(s) Details


OsAffx.20650.1.S1_at

Description gb:NM_195256.1
DB_XREF= gi:37531871
TID=OsAffx.20650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBb0009C07.4), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1107011/11retrotransposon protein, putative, unclassified
LOC_Os09g135103/11retrotransposon protein, putative, unclassified
LOC_Os08g109401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g180601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g051101/11pyruvate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20650.1.S1_at--569--1691Chr10:5886671..5886695 (25 bp)
ACCAAGTATCTTTTAAGGCGCTTCA
LOC_Os10g11070
OsAffx.20650.1.S1_at--1061--891Chr10:5886656..5886680 (25 bp)
AGGCGCTTCAAGATGGTGGATTGTA
LOC_Os10g11070
OsAffx.20650.1.S1_at--603--3731Chr10:5886622..5886646 (25 bp)
CTACACCAATGGGATCAACTGCTGT
LOC_Os10g11070
OsAffx.20650.1.S1_at--905--2554Chr09:7822763..7822787 (25 bp)
AACTGCTGTGTTGGATCCGGATGAA
LOC_Os09g13510
OsAffx.20650.1.S1_at--588--33Chr07:6444135..6444159 (25 bp)
ATTGGATCTTTGCTCTATCTCACTG
NONE
OsAffx.20650.1.S1_at--605--10151Chr10:5886527..5886551 (25 bp)
TATCTCACTGCTTCGAAACCGGACA
LOC_Os10g11070
OsAffx.20650.1.S1_at--1106--10491Chr10:5886453..5886477 (25 bp)
TTCACATCGTCAAGCTGTTAAATGC
LOC_Os10g11070
OsAffx.20650.1.S1_at--971--6155Chr10:12395629..12395653 (25 bp)
GAGGTATTTGCAACATACTCTAGAA
NONE
OsAffx.20650.1.S1_at--824--3673Chr09:7822999..7823023 (25 bp)
CTATATGCTTGAGTGGTTATTCGGA
LOC_Os09g13510
OsAffx.20650.1.S1_at--127--10332Chr10:12395762..12395878 (25 bp)
TTTCTTGGTACTTCTTTGATGGCTT
NONE
OsAffx.20650.1.S1_at--515--8871Chr10:5886274..5886298 (25 bp)
TGATGGCTTGGTCTTCTACGAAACA
LOC_Os10g11070
Target Sequence 
ACCAAGTATCTTTTAAGGCGCTTCAAGATGGTGGATTGTAAACCAATTTCTACACCAATGGGATCAACTGCTGTGTTGGA
TCCGGATGAAGATGTTGAAGTTGTGGATCAAAAGAAGTATAGGAGCATGATTGGATCTTTGCTCTATCTCACTGCTTCGA
AACCGGACATTCAATTTGTTGTGTGTTTGTGTGCTCGTTTTCAAGCTTCTCCACGTGCTTCACATCGTCAAGCTGTTAAA
TGCATCATGAGGTATTTGCAACATACTCTAGAATTTGGAATTTGGTATTCTACATCATCTTCTATATGCTTGAGTGGTTA
TTCGGATGTGGATTTTGGTGGGTGTAAAATTGATAGGAAAAGTACCAGTGGAACATGTCATTTTCTTGGTACTTCTTTGA
TGGCTTGGTCTTCTACGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis