Browse Element(s) Details


OsAffx.20652.1.S1_at

Description tigr:9638.m00980
TID=OsAffx.20652.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1101211/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10980Os.46848.2.S1_x_at11/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10980Os.46848.1.S1_at4/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20652.1.S1_at--22--5191Chr10:5863133..5863157 (25 bp)
GCAAGGGCAACAACTGGCGCGCTGT
LOC_Os10g11012
OsAffx.20652.1.S1_at--209--2211Chr10:5863124..5863148 (25 bp)
ACAACTGGCGCGCTGTCCTCGGCAT
LOC_Os10g11012
OsAffx.20652.1.S1_at--383--3891Chr10:5863112..5863136 (25 bp)
CTGTCCTCGGCATGCGCTACGGCGA
LOC_Os10g11012
OsAffx.20652.1.S1_at--1056--2151Chr10:5863073..5863097 (25 bp)
ACACCATCAAGGACCAGTTCCAGCG
LOC_Os10g11012
OsAffx.20652.1.S1_at--143--2931Chr10:5863065..5863089 (25 bp)
AAGGACCAGTTCCAGCGGCTGTCGC
LOC_Os10g11012
OsAffx.20652.1.S1_at--1042--8331Chr10:5862862..5862886 (25 bp)
GGCGGCGCCCCACAACTACAAGATG
LOC_Os10g11012
OsAffx.20652.1.S1_at--551--651Chr10:5862825..5862849 (25 bp)
ATGCAGCTGCACGTGCCGCGCGAGG
LOC_Os10g11012
OsAffx.20652.1.S1_at--676--9171Chr10:5862786..5862810 (25 bp)
TGCCCCTCCTGCAAGAGCGAGTTTG
LOC_Os10g11012
OsAffx.20652.1.S1_at--558--5331Chr10:5862724..5862748 (25 bp)
GAAGTGCGCCCGGTGCACCGAGTGG
LOC_Os10g11012
OsAffx.20652.1.S1_at--835--5371Chr10:5862667..5862691 (25 bp)
GAAGAAGGAGCCACCCGCCGGGCCG
LOC_Os10g11012
OsAffx.20652.1.S1_at--90--4651Chr10:5862633..5862657 (25 bp)
GCGGTGTTCCAGTGCCCGGCGAAGT
LOC_Os10g11012
Target Sequence 
GCAAGGGCAACAACTGGCGCGCTGTCCTCGGCATGCGCTACGGCGACGCCGCCACGCTGGACACCATCAAGGACCAGTTC
CAGCGGCTGTCGCTCCTCCTCCTCCACCACCCGGACGACGACAACAACAACAACGCCGGCCGCCGCGCCGCCGTCGAGGG
CGCCGTCGAGCTGCTGCGCCGGGCGTGCGAGGACGCCCTCTCGGCCGTCGCCGCCGGCTCCTCCATGGAGGACGACGACG
ACGACGGCACGAGCCGGCGCCCGCACGCGGCGGCGGCGCCCCACAACTACAAGATGCCTCCGCCGGCGATGCAGCTGCAC
GTGCCGCGCGAGGCCATCGTCATCTACTGCCCCTCCTGCAAGAGCGAGTTTGCCGGCAAGGTGGGGCGGCTGGAGCAGCA
GGTGGGGATGAAGTGCGCCCGGTGCACCGAGTGGCTGAGCCCGCCGTGGCAGAAGAAGCCGCAGGCGAAGAAGGAGCCAC
CCGCCGGGCCGGGGCGGCCGGCGGTGTTCCAGTGCCCGGCGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis