Browse Element(s) Details


Os.10675.1.A1_at

Description gb:AK068178.1
DB_XREF= gi:32978196
TID=Os.10675.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130C02, full insert sequence.
FL= gb:AK068178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6814011/11expressed protein
LOC_Os10g110341/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68150Os.9025.3.S1_at10/111+39943995..39947432retrotransposon protein, putative, unclassified, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10675.1.A1_at--222--5311Chr01:39940372..39940396 (25 bp)
GAAGGAGCACGTCTTCAGCAAGAAG
LOC_Os01g68140
Os.10675.1.A1_at--739--1011Chr01:39940347..39940371 (25 bp)
AGGTTCGTGACCAAGGCCAGGTTCA
LOC_Os01g68140
Os.10675.1.A1_at--820--5651Chr01:39940302..39940326 (25 bp)
GACATCAGCATCGAGTGCAGCAGCA
LOC_Os01g68140
Os.10675.1.A1_at--683--4631Chr01:39940245..39940269 (25 bp)
GCGATCAAGATCGACGGCTGCGTCA
LOC_Os01g68140
Os.10675.1.A1_at--682--9651Chr01:39940190..39940214 (25 bp)
TCAGAGGCAACGAGTGCATCTCCAT
LOC_Os01g68140
Os.10675.1.A1_at--761--9031Chr01:39940151..39940175 (25 bp)
TGCAGGTGTACTGGGACGCCCATGA
LOC_Os01g68140
Os.10675.1.A1_at--275--8892Chr10:5874022..5874041 (20 bp)
TGAGGCATGCCTTGTTCATCTTCAA
LOC_Os10g11034
Os.10675.1.A1_at--45--1591Chr01:39940047..39940071 (25 bp)
AGCTCTGAATTCAGCACCGATGAAT
LOC_Os01g68140
Os.10675.1.A1_at--1015--1251Chr01:39940018..39940042 (25 bp)
AGATTTCTGCCTGTTTCTGTACGCA
LOC_Os01g68140
Os.10675.1.A1_at--1--5871Chr01:39939980..39940004 (25 bp)
GAGCCTACACACTTTGTTACTGCGA
LOC_Os01g68140
Os.10675.1.A1_at--580--10331Chr01:39939967..39939991 (25 bp)
TTGTTACTGCGATACGGGCGGACGT
LOC_Os01g68140
Target Sequence 
GAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCA
TCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTC
GTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGC
CCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGG
GAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTAC
ACACTTTGTTACTGCGATACGGGCGGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10675.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis