Browse Element(s) Details


Os.9025.1.A1_s_at

Description gb:AK069641.1
DB_XREF= gi:32979665
TID=Os.9025.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026P04, full insert sequence.
FL= gb:AK069641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6816011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68150Os.9025.3.S1_at10/111+39943995..39947432retrotransposon protein, putative, unclassified, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0004407molecular_functionhistone deacetylase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9025.1.A1_s_at--331--651Chr01:39943773..39943797 (25 bp)
ATGAACCAGTGGTAACACCCTTGAA
LOC_Os01g68160
Os.9025.1.A1_s_at--1019--7811Chr01:39943763..39943787 (25 bp)
GGTAACACCCTTGAAGACATTTCCA
LOC_Os01g68160
Os.9025.1.A1_s_at--562--1391Chr01:39943749..39943773 (25 bp)
AGACATTTCCACATGAGATGGCAAA
LOC_Os01g68160
Os.9025.1.A1_s_at--129--1331Chr01:39943581..39943605 (25 bp)
AGAGAGGTAGTCATCTTCAAGTTAC
LOC_Os01g68160
Os.9025.1.A1_s_at--982--7071Chr01:39943572..39943596 (25 bp)
GTCATCTTCAAGTTACAAACCCTCA
LOC_Os01g68160
Os.9025.1.A1_s_at--249--1831Chr01:39943507..39943531 (25 bp)
ACGCCTAAGCGTTCTGCTAGCTATG
LOC_Os01g68160
Os.9025.1.A1_s_at--1045--4851Chr01:39943492..39943516 (25 bp)
GCTAGCTATGTCTGCAACTCATGCA
LOC_Os01g68160
Os.9025.1.A1_s_at--804--4191Chr01:39943333..39943357 (25 bp)
CCCTGCAACCAATTGATACGAGATA
LOC_Os01g68160
Os.9025.1.A1_s_at--1109--8831Chr01:39943320..39943344 (25 bp)
TGATACGAGATAACACTAGTCTGTG
LOC_Os01g68160
Os.9025.1.A1_s_at--482--7931Chr01:39943193..39943217 (25 bp)
GGATTCGAGACGATGGTCTCTTCAA
LOC_Os01g68160
Os.9025.1.A1_s_at--89--8171Chr01:39943134..39943158 (25 bp)
GGAACGTAGATACCACAGTTTCTTT
LOC_Os01g68160
Target Sequence 
ATGAACCAGTGGTAACACCCTTGAAGACATTTCCACATGAGATGGCAAAGATAGAAGCACCAATTNCGGACAACAAAACT
GGTNCTAATACTAGCAAGAGAGGTAGTCATCTTCAAGTTACAAACCCTCACCCAGCAAAACAGGCAAAGAGGACGCCCAT
AAAGAACGACACGCCTAAGCGTTCTGCTAGCTATGTCTGCAACTCATGCAAAAAGNCTTTCAACTCCTCTGGTGCTNTGA
AGGATCATTCAAAGGCGAAACNCCCTGCAACCAATTGATACGAGATAACACTAGTCTGTGTTAGATTGTTAGTNATAGGT
AACTGAANTNTTTTTTTTTCGCCGGGAGAGAGAGAGANTATTTTTGAAGCAGCTATTTCCTAGCCTCATCTGAAACAATA
TTAGGATTCGAGACGATGGTCTCTTCAACATAATTTTGGAACACTTTATGTGAAAAGATTCTGGAACGTAGATACCACAG
TTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9025.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis