Browse Element(s) Details


OsAffx.28308.3.S1_at

Description tigr:9629.m06760
TID=OsAffx.28308.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g681047/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28308.3.S1_at--973--4311Chr01:39912851..39912875 (25 bp)
CCATCCCCCGTGTGACCGAGAAGGA
NONE
OsAffx.28308.3.S1_at--406--5311Chr01:39912870..39912894 (25 bp)
GAAGGAGCATTCTCGTGTTGGAATA
NONE
OsAffx.28308.3.S1_at--742--8513Chr12:21660874..21661291 (25 bp)
TGGAATAAGTTCATCGCGACGGAGA
NONE
OsAffx.28308.3.S1_at--309--7551Chr01:39913455..39913652 (25 bp)
GTGGCGAGTGGAGTTCCACTTCGAC
NONE
OsAffx.28308.3.S1_at--1090--8111Chr01:39913673..39913697 (25 bp)
GGACGGACCACGAGTCCACGAGCGT
LOC_Os01g68104
OsAffx.28308.3.S1_at--1024--5811Chr01:39913750..39913774 (25 bp)
GACCGAGCTAGTCCGGGTGGAAGCC
LOC_Os01g68104
OsAffx.28308.3.S1_at--925--5771Chr01:39913814..39913838 (25 bp)
GACGAGAACTCCGTCGTGGTCTCCT
LOC_Os01g68104
OsAffx.28308.3.S1_at--359--9435Chr08:5154608..5154627 (20 bp)
TCGTGGTCTCCTTCATGCAGTGGTT
NONE
OsAffx.28308.3.S1_at--362--9251Chr01:39913835..39913859 (25 bp)
TCCTTCATGCAGTGGTTGGCGCGGA
LOC_Os01g68104
OsAffx.28308.3.S1_at--480--6611Chr01:39913849..39913873 (25 bp)
GTTGGCGCGGAGCTACTGATTCCAA
LOC_Os01g68104
OsAffx.28308.3.S1_at--555--8071Chr01:39913857..39913881 (25 bp)
GGAGCTACTGATTCCAACCGGTGCT
LOC_Os01g68104
Target Sequence 
CCATCCCCCGTGTGACCGAGAAGGAGCATTCTCGTGTTGGAATAAGTTCATCGCGACGGAGAGGCAGCGGCACACGGCGG
CGGAGCTGGAGCCACACGCGCGGCGGCTCCCGGTCGTCGCTGGCCGACTTGTGCAGCGGCGCCGGAACAGGAGGAGGTGG
CGGCCGCGACGCCAACTACGACGTGCTCGTGCCGTCGTCCTTCGTGCGCACCGACGGCTGCGGCGGTGGCGAGTGGAGTT
CCACTTCGACGCCGAGACATGGAGAGGACCGGACGGACCACGAGTCCACGAGCGTGGCCGGCGACGAGGAGGCGGAGTCC
GGCGTCGCCGAGCGCTCCGTGGAGGTGGACCGAGCTAGTCCGGGTGGAAGCCATCGACGACATCGCGCTGGAGCGCAAGT
TCCGCCGCCTCGACGAGAACTCCGTCGTGGTCTCCTTCATGCAGTGGTTGGCGCGGAGCTACTGATTCCAACCGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28308.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis