Browse Element(s) Details


Os.8422.1.S1_at

Description gb:AU095929
DB_XREF= gi:8858611
DB_XREF=AU095929
CLONE=S11706
TID=Os.8422.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8422 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50692 (A.thaliana) T50692 proline transport protein 1 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6805011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8422.1.S1_at--313--6751Chr01:39891805..39891829 (25 bp)
GTTCACGGTGCCGATACACGAGGCG
LOC_Os01g68050
Os.8422.1.S1_at--152--9871Chr01:39891819..39891843 (25 bp)
TACACGAGGCGCTGGACACGCAGAT
LOC_Os01g68050
Os.8422.1.S1_at--2--2171Chr01:39891834..39891858 (25 bp)
ACACGCAGATGCAGAGGCTGGACGA
LOC_Os01g68050
Os.8422.1.S1_at--709--5791Chr01:39891854..39891878 (25 bp)
GACGAAGGGATGTTCTCGCGGTACA
LOC_Os01g68050
Os.8422.1.S1_at--288--2891Chr01:39891858..39891882 (25 bp)
AAGGGATGTTCTCGCGGTACAACCT
LOC_Os01g68050
Os.8422.1.S1_at--564--10591Chr01:39891866..39891890 (25 bp)
TTCTCGCGGTACAACCTCGGGAGGC
LOC_Os01g68050
Os.8422.1.S1_at--1033--8311Chr01:39891906..39891930 (25 bp)
GGCTCGTGTTCGGAGCCAACGCCTT
LOC_Os01g68050
Os.8422.1.S1_at--391--9391Chr01:39892312..39892336 (25 bp)
TCGATTACCATTTGCAAGTGCAGTG
LOC_Os01g68050
Os.8422.1.S1_at--976--1731Chr01:39892318..39892342 (25 bp)
ACCATTTGCAAGTGCAGTGTGCTGT
LOC_Os01g68050
Os.8422.1.S1_at--658--9051Chr01:39892330..39892354 (25 bp)
TGCAGTGTGCTGTGATCAGCCGGGT
LOC_Os01g68050
Os.8422.1.S1_at--210--4131Chr01:39892395..39892419 (25 bp)
CGCAGCGCTGTGATTAGCGGGTTTA
LOC_Os01g68050
Target Sequence 
GTTCACGGTGCCGATACACGAGGCGCTGGACACGCAGATGCAGAGGCTGGACGAAGGGATGTTCTCGCGGTACAACCTCG
GGAGGCGGCTGCTGGCGAGGGGGCTCGTGTTCGGAGCCAACGCCTTCNGTCACCGCNGCTCTTCCCCTTCATNGGGCNAN
TTCGTCAACCTCTTCNGGCNTCCTTNCGTCCTCTTCCCTCTCACCTTCATGTTCCCCAGCATGGTCNGTCCTCNAAGATN
NCAAAGGGAANGGATNGAAGNCAGGGAGATGGAACAGGATTTGGCACTGGGGCATCATCGTCGCCTCCTCCGTCCTCAGC
GTCGTCACCACCGCCGCCGCCGTCCGTCTCATCGTCCACAACGCCAGCGTCTACCATTTCTTCGCGGACATGTAATCAAT
CGACGCCGGAGATTACCATTTGCACCGTCGATTACCATTTGCAAGTGCAGTGTGCTGTGATCAGCCGGGTTTAGAGCTTT
GCATTCTTCCATTAAGGATGAGATTNCAAGCGCAGCGCTGTGATTAGCGGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis