Browse Element(s) Details


Os.11316.1.S1_at

Description gb:AK067269.1
DB_XREF= gi:32977287
TID=Os.11316.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.11316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099J01, full insert sequence.
FL= gb:AK067269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6802011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11316.1.S1_at--830--8111Chr01:39874672..39874696 (25 bp)
GGACTGCAGCTGCTGATCCGCCACT
LOC_Os01g68020
Os.11316.1.S1_at--689--8891Chr01:39875106..39875130 (25 bp)
TGAGGGTTGCCAGGGCCATGTCTTC
LOC_Os01g68020
Os.11316.1.S1_at--791--6191Chr01:39875143..39875167 (25 bp)
GAGGCAGATGAGTTGCTCCCAGTGC
LOC_Os01g68020
Os.11316.1.S1_at--985--4791Chr01:39875157..39875181 (25 bp)
GCTCCCAGTGCTGAGCAAGTGCAAT
LOC_Os01g68020
Os.11316.1.S1_at--974--3071Chr01:39875179..39875203 (25 bp)
AATCACAGCATCAGCCTGAGACAGT
LOC_Os01g68020
Os.11316.1.S1_at--92--931Chr01:39875248..39875272 (25 bp)
AGGCATAGTGCATGAGTGTATTGAA
LOC_Os01g68020
Os.11316.1.S1_at--81--5331Chr01:39875270..39875294 (25 bp)
GAAGTGAGCTATTTTTTGGTTTGTT
LOC_Os01g68020
Os.11316.1.S1_at--372--1311Chr01:39875297..39875321 (25 bp)
AGATGGTTTGGTCTCTCAAGTTTGA
LOC_Os01g68020
Os.11316.1.S1_at--176--1211Chr01:39875315..39875339 (25 bp)
AGTTTGAGTTGCTTTACTGTCTTCA
LOC_Os01g68020
Os.11316.1.S1_at--1136--1951Chr01:39875330..39875354 (25 bp)
ACTGTCTTCAATTTGTAGAGTTCTT
LOC_Os01g68020
Os.11316.1.S1_at--845--9471Chr01:39875382..39875406 (25 bp)
TCTGTTGTAAAATTGCCTATATCGT
LOC_Os01g68020
Target Sequence 
GGACTGCAGCTGCTGATCCGCCACTTCTCCCGGTGCCACCGCACCAGCTGCCCGCGCTGCCAGCGCATGTGGCAGCTGCT
CCGCCTCCACGCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATGCAGTTCAGGAGAAAGGAGG
AGGAGAAGGCGGCAGCGAAGGCGAAGGCAAAGGCCGGCGATGATGACGATAAGTGGGGGCTTCTGGTGAAGAAGGTGAGG
GTTGCCAGGGCCATGTCTTCTCTGGGCAAGAGGAGGCAGATGAGTTGCTCCCAGTGCTGAGCAAGTGCAATCACAGCATC
AGCCTGAGACAGTCAAGAGAAGAGTATTGTAGTATAGAAGGGTACTACTATGTAGTTAGGCATAGTGCATGAGTGTATTG
AAGTGAGCTATTTTTTGGTTTGTTCAAGATGGTTTGGTCTCTCAAGTTTGAGTTGCTTTACTGTCTTCAATTTGTAGAGT
TCTTTTGTGAGGTGAGAGAAATGGGCTGAAATCTGTTGTAAAATTGCCTATATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis