Browse Element(s) Details


Os.26355.1.S1_at

Description gb:AK072213.1
DB_XREF= gi:32982236
TID=Os.26355.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29970 putative Mg transporter mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168A06, full insert sequence.
FL= gb:AK120875.1 gb:AK072213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6804011/11CorA-like Mg2+ transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26355.1.S1_at--173--2231Chr01:39878689..39878713 (25 bp)
ACAAGTTGACGATTGCTAGCCTGGT
LOC_Os01g68040
Os.26355.1.S1_at--582--4851Chr01:39878675..39878699 (25 bp)
GCTAGCCTGGTCAGACAAAGCTCTA
LOC_Os01g68040
Os.26355.1.S1_at--686--4091Chr01:39878626..39878650 (25 bp)
CGACTGTATACCTCCTTGAACATAT
LOC_Os01g68040
Os.26355.1.S1_at--629--9811Chr01:39878600..39878624 (25 bp)
TAACTGTTGCTCTGATGGCTTGCAT
LOC_Os01g68040
Os.26355.1.S1_at--174--5411Chr01:39878552..39878576 (25 bp)
GAAGCGATCTTTTTAGCAACTCTGC
LOC_Os01g68040
Os.26355.1.S1_at--716--3771Chr01:39878533..39878557 (25 bp)
CTCTGCGCGGCGATGCATGATGTAA
LOC_Os01g68040
Os.26355.1.S1_at--951--191Chr01:39878472..39878496 (25 bp)
ATTTCGGATGGTTGCACGATTGCTT
LOC_Os01g68040
Os.26355.1.S1_at--970--7151Chr01:39878447..39878471 (25 bp)
GTCTGCAAGCCGTCGTACTAATAGT
LOC_Os01g68040
Os.26355.1.S1_at--1160--3731Chr01:39878430..39878454 (25 bp)
CTAATAGTTTGTGCTGTTGTCGTAT
LOC_Os01g68040
Os.26355.1.S1_at--156--6631Chr01:39878415..39878439 (25 bp)
GTTGTCGTATGTATCTGTAAGCTTC
LOC_Os01g68040
Os.26355.1.S1_at--1124--2771Chr01:39878343..39878367 (25 bp)
AAGAGCATGTCTTATCTGAAGGGTT
LOC_Os01g68040
Target Sequence 
ACAAGTTGACGATTGCTAGCCTGGTCAGACAAAGCTCTATAAACAAGAAGACAACATAGGGCTCGACTGTATACCTCCTT
GAACATATATAACTGTTGCTCTGATGGCTTGCATGTGCAAGGAACAGAGATGAAAAGGAAGCGATCTTTTTAGCAACTCT
GCGCGGCGATGCATGATGTAACTGAGAGATGTATAACAATGTAACTCGGTTTTTGATATTTCGGATGGTTGCACGATTGC
TTGTCTGCAAGCCGTCGTACTAATAGTTTGTGCTGTTGTCGTATGTATCTGTAAGCTTCTTGGAAGCTGTAAATGAACTA
NTACATCATATTCATAAGGAAGTACTAAGAGCATGTCTTATCTGAAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis