Browse Element(s) Details


OsAffx.2431.1.S1_at

Description tigr:9629.m06750
TID=OsAffx.2431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif 2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6800011/11TERMINAL EAR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67970Os.52727.1.S1_at11/111+39820022..39826787jmjC domain containing protein, expressed
LOC_Os01g67980Os.4181.1.S1_at10/111+39828211..39829819Cysteine proteinase EP-B 1 precursor, putative, expressed
LOC_Os01g67990OsAffx.29313.1.S1_at1/111+39839109..39841837Transposable element protein, putative, MuDR
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045836biological_processpositive regulation of meiosis
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2431.1.S1_at--757--9211Chr01:39852252..39852276 (25 bp)
TCCAACCAGCAGATCGAGGCGAGCT
LOC_Os01g68000
OsAffx.2431.1.S1_at--720--9531Chr01:39852316..39852337 (22 bp)
TCTACCTCCCCATAGATTTCAACAA
LOC_Os01g68000
OsAffx.2431.1.S1_at--775--3271Chr01:39853439..39853463 (25 bp)
CAACAAGTGCAACGTGGGCTATGGC
LOC_Os01g68000
OsAffx.2431.1.S1_at--237--4731Chr01:39853499..39853523 (25 bp)
GCTGTACAAGGCGTTCCACAAGCAA
LOC_Os01g68000
OsAffx.2431.1.S1_at--631--891Chr01:39853507..39853531 (25 bp)
AGGCGTTCCACAAGCAACCGTGGGA
LOC_Os01g68000
OsAffx.2431.1.S1_at--658--3991Chr01:39853525..39853549 (25 bp)
CGTGGGAGGTGTTCAACTCGCGCAA
LOC_Os01g68000
OsAffx.2431.1.S1_at--744--10691Chr01:39853553..39853577 (25 bp)
TTGCCAAGTGACATACGCACGCGTG
LOC_Os01g68000
OsAffx.2431.1.S1_at--594--2731Chr01:39853699..39853723 (25 bp)
AAGAACTCCAAGTTCCCGTGCGACA
LOC_Os01g68000
OsAffx.2431.1.S1_at--731--1231Chr01:39853709..39853733 (25 bp)
AGTTCCCGTGCGACAGCGACGAGTA
LOC_Os01g68000
OsAffx.2431.1.S1_at--404--4091Chr01:39853725..39853749 (25 bp)
CGACGAGTACCTGCCCGTGGTGTTC
LOC_Os01g68000
OsAffx.2431.1.S1_at--781--971Chr01:39853880..39853904 (25 bp)
AGGAGCTCATGACAGCGCCGTCTTC
LOC_Os01g68000
Target Sequence 
TCCAACCAGCAGATCGAGGCGAGCTGCGAAGACGAAGCCCAGCCATTCTCCTCCTACGATTTCCTCTACCTCCCCATAGA
TTTCAACAACAAGTGCAACGTGGGCTATGGCTTCGTCAACCTCACCTCGCCGGAGGCTGCCGTGCGGCTGTACAAGGCGT
TCCACAAGCAACCGTGGGAGGTGTTCAACTCGCGCAAGATTTGCCAAGTGACATACGCACGCGTGCAAGGCCTGGACGCG
CTCAAGGAGCACTTCAAGAACTCCAAGTTCCCGTGCGACAGCGACGAGTACCTGCCCGTGGTGTTCTCGCCGCCGCGGGA
CGGCAAGCTGCTCACGGAGCCGGTGCCGCTGGTCGGCCGCTCGCCGGCACCGTCGTCGGCGTCCGGGGCGTCGTCGCCGC
CCAAGAGCTGCGCCGCGAGCGTCGACCCACTCGCGCAGGAGCTCATGACAGCGCCGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis