Browse Element(s) Details


Os.4181.1.S1_at

Description gb:D76415.1
DB_XREF= gi:1514952
TID=Os.4181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4181 (NCBI UniGene Cluster)
DEF=Rice seedling mRNA for cysteine proteinase, complete cds.
PROD=cysteine proteinase
FL= gb:D76415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6798010/11Cysteine proteinase EP-B 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed
LOC_Os01g67960Os.54356.2.S1_at11/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67960Os.54356.1.S1_at10/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67970Os.52727.1.S1_at11/111+39820022..39826787jmjC domain containing protein, expressed
LOC_Os01g67980Os.4181.1.S1_at10/111+39828211..39829819Cysteine proteinase EP-B 1 precursor, putative, expressed
LOC_Os01g67990OsAffx.29313.1.S1_at1/111+39839109..39841837Transposable element protein, putative, MuDR
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4181.1.S1_at--869--4611Chr01:39829238..39829262 (25 bp)
GCGAGACCAACGACGGCACGGAGTA
LOC_Os01g67980
Os.4181.1.S1_at--96--7991Chr01:39829316..39829340 (25 bp)
GGATGCAGCGCGACTCCGGCTACGA
LOC_Os01g67980
Os.4181.1.S1_at--369--9731Chr01:39829382..39829406 (25 bp)
TCAAGTTCTCGCCAAATCGTGTCAC
LOC_Os01g67980
Os.4181.1.S1_at--479--8571Chr01:39829489..39829513 (25 bp)
TGGATCAACGGCTCTGGTCGCGTCT
LOC_Os01g67980
Os.4181.1.S1_at--562--3811Chr01:39829512..39829536 (25 bp)
CTCCTCCTCCAGCTTGCAAAATGGT
LOC_Os01g67980
Os.4181.1.S1_at--1054--9091Chr01:39829548..39829572 (25 bp)
TGCTGCTCTTTGTTAATTGCCTTGT
LOC_Os01g67980
Os.4181.1.S1_at--1081--5191Chr01:39829607..39829631 (25 bp)
GAATTACCTGAAATCGTCTAAGTTA
LOC_Os01g67980
Os.4181.1.S1_at--443--3711Chr01:39829632..39829656 (25 bp)
CTAGTGTTATTTCGTGTGTGCTAAA
LOC_Os01g67980
Os.4181.1.S1_at--238--791NONE
ATGTGAGGTGAGGTCGATCGATCTA
NONE
Os.4181.1.S1_at--815--511Chr01:39829680..39829723 (24 bp)
ATCGATCTATCATGTGGTGTTCTTC
LOC_Os01g67980
Os.4181.1.S1_at--11--7751Chr01:39829714..39829739 (25 bp)
GGTGTTCTTCGTGGCACCGGAAATA
LOC_Os01g67980
Target Sequence 
GCGAGACCAACGACGGCACGGAGTACTGGATCGTCAAGAACTCGTGGGGCACAGCCTGGGGCGAGGGCGGCTACATCCGG
ATGCAGCGCGACTCCGGCTACGACGGCGGCCTCTGCGGCATCGCCATGGAAGCCTCCTACCCCGTCAAGTTCTCGCCAAA
TCGTGTCACGCCAAGGCGCGCCCTTGGGCCAAAGGAAACCCAGTGATCGAGCCGGCGCCATCTCCGCCGTACACATGCCC
GCCTACGAGCCTGGATCAACGGCTCTGGTCGCGTCTCCTCCTCCAGCTTGCAAAATGGTGCTATTATTGTTGCTGCTCTT
TGTTAATTGCCTTGTGTTTATGTAATTCGTGTGAGGCGATCAGGGAAAAGAATTACCTGAAATCGTCTAAGTTACTAGTG
TTATTTCGTGTGTGCTAAATAAGTTTTAGATGTGAGGTGAGGTCGATCGATCTATCATGTGGTGTTCTTCGTGGCACCGG
AAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis