Browse Element(s) Details


Os.38856.1.A1_s_at

Description gb:CR290649
DB_XREF= gi:44677215
DB_XREF=CR290649
CLONE=p497b02p3
TID=Os.38856.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38856 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48609 (A.thaliana) T48609 hypothetical protein F18O22.150 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6795011/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed
LOC_Os01g67960Os.54356.2.S1_at11/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67960Os.54356.1.S1_at10/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67970Os.52727.1.S1_at11/111+39820022..39826787jmjC domain containing protein, expressed
LOC_Os01g67980Os.4181.1.S1_at10/111+39828211..39829819Cysteine proteinase EP-B 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38856.1.A1_s_at--390--4631Chr01:39811170..39811194 (25 bp)
GCGATCACCTGCACATGGTCGGAGT
LOC_Os01g67950
Os.38856.1.A1_s_at--653--9191Chr01:39811289..39811313 (25 bp)
TGCCATTCCTTCATCGAAGTCTAGA
LOC_Os01g67950
Os.38856.1.A1_s_at--81--9831Chr01:39811322..39811346 (25 bp)
TAAACCCGCCATTTTGACTTGTTCT
LOC_Os01g67950
Os.38856.1.A1_s_at--365--7791Chr01:39811352..39811376 (25 bp)
GGTCTGCTTGCAAGAGTGACACCAC
LOC_Os01g67950
Os.38856.1.A1_s_at--1064--7351Chr01:39811367..39811391 (25 bp)
GTGACACCACGCAAAGATCCTTTTT
LOC_Os01g67950
Os.38856.1.A1_s_at--411--10691Chr01:39811395..39811419 (25 bp)
TTCCAGCTCAATCGTCTAACTGCAT
LOC_Os01g67950
Os.38856.1.A1_s_at--905--7151Chr01:39811408..39811432 (25 bp)
GTCTAACTGCATTGTTCGGAGTCAC
LOC_Os01g67950
Os.38856.1.A1_s_at--232--9451Chr01:39811423..39811447 (25 bp)
TCGGAGTCACTGTTCCATTTCTCGA
LOC_Os01g67950
Os.38856.1.A1_s_at--686--6131Chr01:39811452..39811476 (25 bp)
GAGGGTAGTCTGGATTCAGCCGATT
LOC_Os01g67950
Os.38856.1.A1_s_at--708--5251Chr01:39811477..39811501 (25 bp)
GAATCGAATCGTCTGCACCAATAGT
LOC_Os01g67950
Os.38856.1.A1_s_at--535--1611Chr01:39811573..39811597 (25 bp)
AGCTGTAATACTTCTTACCCCATGT
LOC_Os01g67950
Target Sequence 
GCGATCACCTGCACATGGTCGGAGTCCAGGACAAGGACAAGGTGCTGCTGCTGGAAGACCCGGCCGTCAAGGAGAGGAAG
CTCCGGTCGACCACCCTGGCGCAGCTCATGGGAGTGCCCTGCCATTCCTTCATCGAAGTCTAGAAATTAAATTAAACCCG
CCATTTTGACTTGTTCTTTTTTGGTCTGCTTGCAAGAGTGACACCACGCAAAGATCCTTTTTTGTTTCCAGCTCAATCGT
CTAACTGCATTGTTCGGAGTCACTGTTCCATTTCTCGAGTTCGAGGGTAGTCTGGATTCAGCCGATTGAATCGAATCGTC
TGCACCAATAGTCCAATACGACACAAAGACATAATGTAAATTAATGTAATTAGATAATGTCAGTGTGTGTTGTGTATTAT
TTCAGCTGTAATACTTCTTACCCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38856.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis