Browse Element(s) Details


OsAffx.11783.1.S1_x_at

Description tigr:9629.m06741
TID=OsAffx.11783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g679108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed
LOC_Os01g67960Os.54356.2.S1_at11/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67960Os.54356.1.S1_at10/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11783.1.S1_x_at--1000--891NONE
AGGCGTATGAGATCGACCGGATTGA
NONE
OsAffx.11783.1.S1_x_at--39--4651NONE
GCGTATGAGATCGACCGGATTGAGT
NONE
OsAffx.11783.1.S1_x_at--601--4031NONE
CGTATGAGATCGACCGGATTGAGTG
NONE
OsAffx.11783.1.S1_x_at--140--8911Chr01:39792213..39792235 (23 bp)
TGAGATCGACCGGATTGAGTGGCCT
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--1026--6031Chr01:39792212..39792235 (24 bp)
GAGATCGACCGGATTGAGTGGCCTT
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--598--1271Chr01:39792211..39792235 (25 bp)
AGATCGACCGGATTGAGTGGCCTTG
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--281--6391Chr01:39792210..39792234 (25 bp)
GATCGACCGGATTGAGTGGCCTTGA
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--167--4091Chr01:39792207..39792231 (25 bp)
CGACCGGATTGAGTGGCCTTGAGCT
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--584--1771Chr01:39792205..39792229 (25 bp)
ACCGGATTGAGTGGCCTTGAGCTCG
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--931--51Chr01:39792200..39792224 (25 bp)
ATTGAGTGGCCTTGAGCTCGTGGCC
LOC_Os01g67910
OsAffx.11783.1.S1_x_at--110--8371Chr01:39792156..39792180 (25 bp)
GGCGAGTGGCAAGGTCCGGGTGGGT
LOC_Os01g67910
Target Sequence 
AGGCGTATGAGATCGACCGGATTGAGTGGCCTTGAGCTCGTGGCCGCCGGATCTTCGACGGTGGGGCGAGTGGCAAGGTC
CGGGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11783.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis