Browse Element(s) Details


OsAffx.23963.1.S1_x_at

Description tigr:9629.m06738
TID=OsAffx.23963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Vps53-like, N-terminal, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6788011/11membrane trafficking VPS53 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005739cellular_componentmitochondrion
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23963.1.S1_x_at--196--2151Chr01:39778016..39778037 (22 bp)
ACAGCAGATGCTTTTGGACACTCAA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--1--4871Chr01:39777974..39777998 (25 bp)
GCTAGACATCCCATCTCTTGGAAAA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--492--8151Chr01:39777477..39777979 (25 bp)
GGAAAACAGAGTACCGCTGCGGCTA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--758--4691Chr01:39777459..39777483 (25 bp)
GCGGCTAGCTACTCCAAGTTTGTAA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--536--2331Chr01:39777422..39777444 (23 bp)
AAAGCTGAAGCACTCCTAAAGGTTA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--165--1251Chr01:39777262..39777286 (25 bp)
AGTTGACTCTGTTGCTAACACCTAC
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--877--6011Chr01:39777207..39777231 (25 bp)
GAGTTCCAACGGATACTTGACCTCA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--426--6191Chr01:39777038..39777062 (25 bp)
GAGGACTTCAACAAGCATAGCCCCG
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--1065--851Chr01:39776906..39776930 (25 bp)
ATGGCTACCTTGACAGGAGCTCTGG
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--1088--8391Chr01:39776837..39776861 (25 bp)
GGCGCGGCCACTACAGGGTTCAAGA
LOC_Os01g67880
OsAffx.23963.1.S1_x_at--638--4311Chr01:39776808..39776832 (25 bp)
CCTTGCGTTGACAGAGGCGGCCAAA
LOC_Os01g67880
Target Sequence 
ACAGCAGATGCTTTTGGACACTCAAGCTGTAAAGACTATTCTGCTAGACATCCCATCTCTTGGAAAACAGAGTACCGCTG
CGGCTAGCTACTCCAAGTTTGTAAGCCGGGAAATGAGTAAAGCTGAAGCACTCCTAAAGGTTATTTTGTCACCAGTTGAC
TCTGTTGCTAACACCTACCGCGCTCTCCTACCGGAAGGAACACCACTTGAGTTCCAACGGATACTTGACCTCAAGGGATT
GAAGAAAGCAGACCAGCAAACCATACTGGAGGACTTCAACAAGCATAGCCCCGCTATCAAACACCCTGCCGTTGCTCCAA
CAGTTGCACCACCAGTTGCCACTTCATCCGCCCACCACATTGCACCGGTCACCACCCCGACCGTTTCGACCACACCAAGC
ATGGCTACCTTGACAGGAGCTCTGGCCAACCGGGAGGACGTGCTCGCCCGCGCCGCGGCGCTTGGGCGGGGCGCGGCCAC
TACAGGGTTCAAGAGGTTCCTTGCGTTGACAGAGGCGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23963.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis