Browse Element(s) Details


Os.13901.1.S1_at

Description gb:AK060020.1
DB_XREF= gi:32970038
TID=Os.13901.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full insert sequence.
FL= gb:AK099185.1 gb:AK106188.1 gb:AK060020.1 gb:AK104453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6785011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67800NANA1+39730000..39734334retrotransposon protein, putative, unclassified
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13901.1.S1_at--725--9191Chr01:39757048..39757072 (25 bp)
TGCCATGTGCATCAACTGTTATCGA
LOC_Os01g67850
Os.13901.1.S1_at--611--9291Chr01:39758770..39758794 (25 bp)
TCCGATCAAGGGACCTCTGGGTGCT
LOC_Os01g67850
Os.13901.1.S1_at--742--8851Chr01:39758812..39758836 (25 bp)
TGATCGACACCGTGACGCTGGAGAA
LOC_Os01g67850
Os.13901.1.S1_at--155--5291Chr01:39758840..39758864 (25 bp)
GAATGTGAGGCACTTCCACAGCTTC
LOC_Os01g67850
Os.13901.1.S1_at--66--4691Chr01:39758903..39758927 (25 bp)
GCTGGTGTACTACGACTACCTAGTC
LOC_Os01g67850
Os.13901.1.S1_at--1068--1331Chr01:39758970..39758994 (25 bp)
AGAGTTCAGTACGTGTTCCGGGCAG
LOC_Os01g67850
Os.13901.1.S1_at--472--5851Chr01:39758997..39759021 (25 bp)
GACCATCCTCTGCAGATTGAGTCTG
LOC_Os01g67850
Os.13901.1.S1_at--493--8311Chr01:39759021..39759045 (25 bp)
GGCTAGCGAAATGCCATGCCGTCAA
LOC_Os01g67850
Os.13901.1.S1_at--1061--5631Chr01:39759059..39759083 (25 bp)
GACACCATTGCTCCTTATTAGGGCT
LOC_Os01g67850
Os.13901.1.S1_at--641--10431Chr01:39759076..39759100 (25 bp)
TTAGGGCTGGGCTCTGCGTAATCGC
LOC_Os01g67850
Os.13901.1.S1_at--718--7711Chr01:39759235..39759259 (25 bp)
GGGTGTTTATTGACCTGCACCAACT
LOC_Os01g67850
Target Sequence 
TGCCATGTGCATCAACTGTTATCGAGACTGGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAG
TCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGACACCGTGACGCTGGAGAAGGAGAATGTGAGG
CACTTCCACAGCTTCATCGACAGCCTGCCCCTCATAGTCCCTGACAACCTCTTGCTGGTGTACTACGACTACCTAGTCTG
ACGAAGCTCAGCTCTCCTCTTCTGAAAGATATTGAGATTCAGAGTTCAGTACGTGTTCCGGGCAGCCGACCATCCTCTGC
AGATTGAGTCTGGCTAGCGAAATGCCATGCCGTCAATGGCGAAGACGACGACACCATTGCTCCTTATTAGGGCTGGGCTC
TGCGTAATCGCATTGTTTGTTGTAATAAGTGTATATACAGAATTAAAAAGAGATATTGGGGAAGATGGTTTTCTCATGTT
TAACTANNNNNNNNNNANNNNNGCTCTGGCAAATTGCCAAATGATTCAGAAAAGGGACAGGTGCTGGGTGTTTATTGACC
TGCACCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis