Browse Element(s) Details


Os.8999.1.S1_at

Description gb:AK073770.1
DB_XREF= gi:32983793
TID=Os.8999.1
CNT=433
FEA=FLmRNA
TIER=FL+Stack
STK=64
UG=Os.8999 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for aldolase C-1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068A16, full insert sequence.
FL= gb:AK073770.1 gb:D50301.1 gb:AK104719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g678608/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8999.1.S1_at--764--7351Chr01:39760654..39760678 (25 bp)
GTGAAGGCGCAGAAGGCCTTCATCA
LOC_Os01g67860
Os.8999.1.S1_at--896--2011NONE
ACTACAAGTACTGAGTCTGCTTCTG
NONE
Os.8999.1.S1_at--120--2231NONE
ACAAGTACTGAGTCTGCTTCTGGTG
NONE
Os.8999.1.S1_at--814--1171NONE
AGTACTGAGTCTGCTTCTGGTGGTG
NONE
Os.8999.1.S1_at--883--6791Chr01:39760275..39760299 (25 bp)
GTTATTTTCTGCTGTACTCCTATGT
LOC_Os01g67860
Os.8999.1.S1_at--630--10411Chr01:39760274..39760298 (25 bp)
TTATTTTCTGCTGTACTCCTATGTT
LOC_Os01g67860
Os.8999.1.S1_at--611--171Chr01:39760272..39760296 (25 bp)
ATTTTCTGCTGTACTCCTATGTTAA
LOC_Os01g67860
Os.8999.1.S1_at--517--10311Chr01:39760270..39760294 (25 bp)
TTTCTGCTGTACTCCTATGTTAATT
LOC_Os01g67860
Os.8999.1.S1_at--961--9471Chr01:39760268..39760292 (25 bp)
TCTGCTGTACTCCTATGTTAATTAA
LOC_Os01g67860
Os.8999.1.S1_at--762--4571Chr01:39760265..39760289 (25 bp)
GCTGTACTCCTATGTTAATTAAACC
LOC_Os01g67860
Os.8999.1.S1_at--627--8731Chr01:39760263..39760287 (25 bp)
TGTACTCCTATGTTAATTAAACCTT
LOC_Os01g67860
Target Sequence 
GTGAAGGCGCAGAAGGCCTTCATCACCAGGTGCAAGGCCAACTCTGAGGCTACCCTTGGTACATACCAGGGTGATGCTGT
GCTCGGCGAGGGTGCCTCTGAGAGCCTTCACGTCAAGGACTACAAGTACTGAGTCTGCTTCTGGTGGTGGCTGAAGATCC
GATTGGACATCCTCCGTATGCATATTTAGGGTTCTGAGTGTGGTTTGGCTATCAAGCGTCCAATCTTACGGGTATCAAAA
ACTTTTGTCGCAATAATCTGAACCTGTGCTTTTTAATAATTAATACCTGTCATCGGTAGTAGNTTTTTTGGTATTCCTGT
AATCAAATGCTGCGTATGGTAAATTGGAGCAGCGGCTTTAATTCCATGCTATCTNTTTNTTGNTNGTTATTTTCTGCTGT
ACTCCTATGTTAATTAAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis