Browse Element(s) Details


Os.53052.1.S1_at

Description gb:AK070609.1
DB_XREF= gi:32980633
TID=Os.53052.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063C17, full insert sequence.
FL= gb:AK070609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g678209/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g67780NANA1+39725304..39726995NA
LOC_Os01g67790OsAffx.18055.1.S1_at2/111+39728030..39728512hypothetical protein
LOC_Os01g67800NANA1+39730000..39734334retrotransposon protein, putative, unclassified
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53052.1.S1_at--393--1711Chr01:39739483..39739507 (25 bp)
ACCAACGCGAGCTACGTGGCGAGAC
LOC_Os01g67820
Os.53052.1.S1_at--470--4491Chr01:39739650..39739674 (25 bp)
GCCGGTGAAAGTTGCCGCCAAGTTC
LOC_Os01g67820
Os.53052.1.S1_at--1076--9651Chr01:39739673..39739697 (25 bp)
TCAGCTCCGCGTTTGACGAAGCGTA
LOC_Os01g67820
Os.53052.1.S1_at--538--5411Chr01:39739690..39739714 (25 bp)
GAAGCGTACGAGAGTCAGGTGCACC
LOC_Os01g67820
Os.53052.1.S1_at--156--1351Chr01:39739700..39739724 (25 bp)
AGAGTCAGGTGCACCGCGAGATTCC
LOC_Os01g67820
Os.53052.1.S1_at--685--9431Chr01:39739762..39739786 (25 bp)
TCGGAGATGGTCGTTCCCGCTTACA
LOC_Os01g67820
Os.53052.1.S1_at--1000--4211Chr01:39739778..39739802 (25 bp)
CCGCTTACAGCGCATACTTGCAGAA
LOC_Os01g67820
Os.53052.1.S1_at--1103--311Chr01:39739791..39739815 (25 bp)
ATACTTGCAGAATCACCCCAAGCTC
LOC_Os01g67820
Os.53052.1.S1_at--440--2691Chr01:39739810..39739834 (25 bp)
AAGCTCCAGAAAAACGTCAGGCACA
LOC_Os01g67820
Os.53052.1.S1_at--534--8131Chr01:39739917..39739941 (25 bp)
GGACAGCGCCAGATTCTTTTGTAAT
NONE
Os.53052.1.S1_at--681--10871Chr01:39739969..39739993 (25 bp)
TTGGCTTTGTATACTGCTCATGTTA
NONE
Target Sequence 
ACCAACGCGAGCTACGTGGCGAGACGCGCCGTGGACGCCGGCGTGGAGCCTCTGCTCGGAGACGGGTGGGCCGCGCGGCG
CGGGAGCCTGATCGCGCGGTACGTGGCGAGCTACGTCGAGGCGTGTTGGGCCCCGGTTGCGGCTTGCCTGGAAACCGCGG
GGAGGAAGCCGGTGAAAGTTGCCGCCAAGTTCAGCTCCGCGTTTGACGAAGCGTACGAGAGTCAGGTGCACCGCGAGATT
CCCGATCCCGCGCTGCGCGACGCGCTGCGGAAGGCCGCGTCGGAGATGGTCGTTCCCGCTTACAGCGCATACTTGCAGAA
TCACCCCAAGCTCCAGAAAAACGTCAGGCACACCGCGGGCGAGCTGGACCGGTTGCTGTGGGAGTTGTTCGAAGGAGAAG
CGGCGGAGCGCAACAAATTGTTGCTGTAATTTTAGGACAGCGCCAGATTCTTTTGTAATACTTTCTCTATTTCAAATTAG
CTATATTTGGCTTTGTATACTGCTCATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis