Browse Element(s) Details


Os.49428.1.S1_at

Description gb:AK062250.1
DB_XREF= gi:32972268
TID=Os.49428.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G01, full insert sequence.
FL= gb:AK062250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6777011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g67780NANA1+39725304..39726995NA
LOC_Os01g67790OsAffx.18055.1.S1_at2/111+39728030..39728512hypothetical protein
LOC_Os01g67800NANA1+39730000..39734334retrotransposon protein, putative, unclassified
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49428.1.S1_at--674--8931Chr01:39714632..39714656 (25 bp)
TGACCTGAAGTCTTCCGGTGTGGAC
LOC_Os01g67770
Os.49428.1.S1_at--326--8651Chr01:39714614..39714638 (25 bp)
TGTGGACGGGTTGCCCAGCATTAAA
LOC_Os01g67770
Os.49428.1.S1_at--1069--9131Chr01:39714552..39714576 (25 bp)
TGCGTCCTTCGCAAGAGCCAAGTAT
LOC_Os01g67770
Os.49428.1.S1_at--572--8871Chr01:39714497..39714521 (25 bp)
TGAGGACTTACCCAGTTATCCACTT
LOC_Os01g67770
Os.49428.1.S1_at--889--7371Chr01:39714417..39714441 (25 bp)
GTGACGCAATGATACTATCCGGACT
LOC_Os01g67770
Os.49428.1.S1_at--328--9011Chr01:39714329..39714353 (25 bp)
TGAATGTCTCTTTGCATCATCCTGA
LOC_Os01g67770
Os.49428.1.S1_at--773--4151Chr01:39714299..39714323 (25 bp)
CGCCCTTCTTTCGACAATGCTATTT
LOC_Os01g67770
Os.49428.1.S1_at--1105--6291Chr01:39714264..39714288 (25 bp)
GATGATGTTCTTTGGTATGTTCCCA
LOC_Os01g67770
Os.49428.1.S1_at--4--10131Chr01:39714249..39714273 (25 bp)
TATGTTCCCATATAGCTCCTCTTGT
LOC_Os01g67770
Os.49428.1.S1_at--459--4791Chr01:39714235..39714259 (25 bp)
GCTCCTCTTGTAGGGCTATAGTCAG
LOC_Os01g67770
Os.49428.1.S1_at--1032--7091Chr01:39714215..39714239 (25 bp)
GTCAGCTAACTTGATCCTACGGTGG
LOC_Os01g67770
Target Sequence 
TGACCTGAAGTCTTCCGGTGTGGACGGGTTGCCCAGCATTAAAGATTGTTGCNTTGATCAGACGAACAGCCAAGGAAGTT
TGCGTCCTTCGCAAGAGCCAAGTATCATAGGCAGCACAGAGTTGGCTTCTCTGCNTGAGGACTTACCCAGTTATCCACTT
CACGGTGTCTCCCTNGAGAATATAGGACTGAGTAGCATTGACTTACTAAACTACAGTGACGCAATGATACTATCCGGACT
ACAAAGTAACTGGTATGATGATCTAGAGTTTAGCAGCGAAATGATGGACTATCCATCGATAGATGAATGTCTCTTTGCAT
CATCCTGAGCTGCCGCCCTTCTTTCGACAATGCTATTTNGCGAGGAAGGATGATGTTCTTTGGTATGTTCCCATATAGCT
CCTCTTGTAGGGCTATAGTCAGCTAACTTGATCCTACGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis