Browse Element(s) Details


OsAffx.18055.1.S1_at

Description tigr:9637.m03328
TID=OsAffx.18055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box protein interaction domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3900011/11F-box protein interaction domain containing protein
LOC_Os01g677902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18055.1.S1_at--85--8711Chr09:22391679..22391703 (25 bp)
TGTCCTTCTCCATAGGCGGCGAGCA
LOC_Os09g39000
OsAffx.18055.1.S1_at--831--10051Chr09:22391691..22391715 (25 bp)
TAGGCGGCGAGCAGTTCGGGTGGGT
LOC_Os09g39000
OsAffx.18055.1.S1_at--438--10612Chr09:22391801..22391825 (25 bp)
TTCGGCCGCGTCTACGGGCTCTTCA
LOC_Os09g39000
OsAffx.18055.1.S1_at--729--9932Chr09:22391813..22391837 (25 bp)
TACGGGCTCTTCACGTGGAGCGGCC
LOC_Os09g39000
OsAffx.18055.1.S1_at--1079--9131Chr09:22391868..22391892 (25 bp)
TGCGGTGCTCCATCAACCTGCAGAT
LOC_Os09g39000
OsAffx.18055.1.S1_at--577--3251Chr09:22391881..22391905 (25 bp)
CAACCTGCAGATCCTGCCGGAGCAG
LOC_Os09g39000
OsAffx.18055.1.S1_at--1135--6391Chr09:22391935..22391959 (25 bp)
GATCGTGCCGCTGTGCAGCGCGGGA
LOC_Os09g39000
OsAffx.18055.1.S1_at--859--1891Chr09:22392018..22392042 (25 bp)
ACGTCGAGCGCAACGCCGTGGAGCG
LOC_Os09g39000
OsAffx.18055.1.S1_at--553--4571Chr09:22392040..22392064 (25 bp)
GCGCGTGTTCCGGATGCAAGACATG
LOC_Os09g39000
OsAffx.18055.1.S1_at--1102--6691Chr09:22392046..22392070 (25 bp)
GTTCCGGATGCAAGACATGGTCGCC
LOC_Os09g39000
OsAffx.18055.1.S1_at--293--8991Chr09:22392183..22392207 (25 bp)
TGAAGGTGAAGCTTGGACGCCGCCG
LOC_Os09g39000
Target Sequence 
TGTCCTTCTCCATAGGCGGCGAGCAGTTCGGGTGGGTGTACGTGCCGCCGCGGCTGTCCTCCCGCATCTGCCACCTCGCC
GACCTCGACGGCTCGCTGTGCGCCGTCTACGACAACCGCCTCTTCGGCCGCGTCTACGGGCTCTTCACGTGGAGCGGCCG
GTCGTCGTCGCCGTCGCCGTCGTGGTCGGTGCGGTGCTCCATCAACCTGCAGATCCTGCCGGAGCAGGTGAGCGAGGAGC
TCGCCGGTGAGCGCGTGATCGTGCCGCTGTGCAGCGCGGGAGGCGCCGGCAGCAGCAAGATCATGCTCGCCACGGGGGGG
CACAAGGTGTTCGTCTACGACGTCGAGCGCAACGCCGTGGAGCGCGTGTTCCGGATGCAAGACATGGTCGCCGTCCCGCG
CGGCTACCTCCAGGCTCCCCTGCTACTCAGCGTCGGCCTCCACGACGAGCGCATCGCCGACGTCGTCCACCGCCGTGCCG
GCGCCGGCGACGGCGAGAGAAGGCTGAAGGTGAAGCTTGGACGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis