Browse Element(s) Details


Os.27250.1.S1_at

Description gb:AK060773.1
DB_XREF= gi:32970791
TID=Os.27250.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B08, full insert sequence.
FL= gb:AK068277.1 gb:AK060773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3898011/11RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0008219biological_processcell death
GO:0009627biological_processsystemic acquired resistance
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009790biological_processembryonic development
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27250.1.S1_at--426--6351Chr09:22385976..22386000 (25 bp)
GATGCTGGTGTGGTAGACCCATGCA
LOC_Os09g38980
Os.27250.1.S1_at--118--6271Chr09:22386010..22386034 (25 bp)
GATGTGTGCTTCAAAACTCTGCCTC
LOC_Os09g38980
Os.27250.1.S1_at--101--2551Chr09:22386024..22386048 (25 bp)
AACTCTGCCTCTATTGCAGGACTTA
LOC_Os09g38980
Os.27250.1.S1_at--938--5791Chr09:22386056..22386080 (25 bp)
GACGCAAGCTATGATGTTCGACAAA
LOC_Os09g38980
Os.27250.1.S1_at--97--8511Chr09:22386116..22386140 (25 bp)
TGGCATCCCACCATTGCAGATAAAT
LOC_Os09g38980
Os.27250.1.S1_at--682--1031Chr09:22386185..22386209 (25 bp)
AGGTCCATGATGCAAGGCCTTTGTT
LOC_Os09g38980
Os.27250.1.S1_at--31--2951Chr09:22386198..22386222 (25 bp)
AAGGCCTTTGTTTGATCGGTTAGAT
LOC_Os09g38980
Os.27250.1.S1_at--752--1091Chr09:22386243..22386267 (25 bp)
AGTGGAGCCTCTGAGCAGATCATCA
LOC_Os09g38980
Os.27250.1.S1_at--268--6431Chr09:22386260..22386284 (25 bp)
GATCATCAGCTGGAGCCACTGGGTA
LOC_Os09g38980
Os.27250.1.S1_at--643--7111Chr09:22386352..22386376 (25 bp)
GTCAGCAAAATGTCTCCATATCCCT
LOC_Os09g38980
Os.27250.1.S1_at--1148--9454Chr10:8931591..8931611 (21 bp)
TCTCTCTTTTCCCTTGGAGGTGCAA
NONE
Target Sequence 
GATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAAT
GACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCATCCCACCATTGCAGA
TAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCG
GTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAG
GAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCC
TCTTCTCTCTTTTCCCTTGGAGGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis