Browse Element(s) Details


Os.7169.1.S1_at

Description gb:AK068364.1
DB_XREF= gi:32978382
TID=Os.7169.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146L21, full insert sequence.
FL= gb:AK068364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3903411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7169.1.S1_at--415--5971Chr09:22406050..22406074 (25 bp)
GAGAAGACCCTGCATTATACTGATT
LOC_Os09g39034
Os.7169.1.S1_at--694--131Chr09:22405925..22406020 (25 bp)
ATTAATCTCCCTGATCTTACACGAG
LOC_Os09g39034
Os.7169.1.S1_at--1025--6411Chr09:22405882..22405906 (25 bp)
GATCTACATGTGTTTGCTTCCACGA
LOC_Os09g39034
Os.7169.1.S1_at--785--10111Chr09:22405751..22405775 (25 bp)
TATGTTTTTGGAGTCACGCCTGTTC
LOC_Os09g39034
Os.7169.1.S1_at--690--7091Chr09:22405739..22405763 (25 bp)
GTCACGCCTGTTCACGAGGAGAGTT
LOC_Os09g39034
Os.7169.1.S1_at--1015--1351Chr09:22405268..22405292 (25 bp)
AGAGCACCTCCTCTTAAGGCAAAGG
LOC_Os09g39034
Os.7169.1.S1_at--863--2531Chr09:22405225..22405249 (25 bp)
AACTCACCATTAGCGAGCTTACTGT
LOC_Os09g39034
Os.7169.1.S1_at--468--9031Chr09:22405189..22405213 (25 bp)
TGCACTGGTGAAATTCGACGCCATT
LOC_Os09g39034
Os.7169.1.S1_at--131--10511Chr09:22405129..22405153 (25 bp)
TTCAATTCCGTAATCAGTCATGGTG
LOC_Os09g39034
Os.7169.1.S1_at--798--8171Chr09:22405083..22405107 (25 bp)
GGAACCTTAATTTTGAGCACTTGTC
LOC_Os09g39034
Os.7169.1.S1_at--949--2411Chr09:22405025..22405049 (25 bp)
AAAACTTGTCAAACTGCTGGCCTGT
LOC_Os09g39034
Target Sequence 
GAGAAGACCCTGCATTATACTGATTCAACAATTAGATGCTATCAACAACGAAACATTAATCTCCCTGATCTTACACGAGA
TGAACAACATGGATAGAGATCTACATGTGTTTGCTTCCACGAGGTGGTGGCAACTCATACACCATATGTTTTTGGAGTCA
CGCCTGTTCACGAGGAGAGTTTTTTGTGGCGTGGATTCAAAAAAAGATGAATGCGATTTTGTGGGCCAAGCTTTATTTGA
GATACAACAGAGGATGGGAACAGCATCAGATAAGAGCACCTCCTCTTAAGGCAAAGGAGGGAGAGGAGATAAGATAACTC
ACCATTAGCGAGCTTACTGTATTGGTTATGATGCACTGGTGAAATTCGACGCCATTAGNTTTTACTGTATGTTTATGATG
GGCTGGTAAAATTCAATTCCGTAATCAGTCATGGTGAGAGTTGTCTGGTAACTGTGAGGAACCTTAATTTTGAGCACTTG
TCTGAATTTTTNTTTCTTTCGAGGTAACANTTCCTAAAACTTGTCAAACTGCTGGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis