Browse Element(s) Details


OsAffx.30202.1.S1_x_at

Description tigr:9637.m03346
TID=OsAffx.30202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3917011/11Papain family cysteine protease containing protein
LOC_Os11g346603/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os09g113001/11hypothetical protein
LOC_Os09g390901/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006869biological_processlipid transport
GO:0009414biological_processresponse to water deprivation
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30202.1.S1_x_at--1105--9671Chr09:22493744..22493768 (25 bp)
TCACGACGTCCCGTTCACGGACAAG
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--321--5872Chr09:22493693..22493717 (25 bp)
GAGCCTGTACGAGAGATGGCGCAGC
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--750--1311Chr09:22493680..22493704 (25 bp)
AGATGGCGCAGCGTGTATGCGTCGT
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--640--871Chr09:22493678..22493702 (25 bp)
ATGGCGCAGCGTGTATGCGTCGTCG
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--1148--9391Chr09:22493653..22493677 (25 bp)
TCGTCGTCGGGCACTACTACAGATC
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--188--7211Chr09:22493651..22493675 (25 bp)
GTCGTCGGGCACTACTACAGATCCG
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--399--9411Chr09:22493650..22493674 (25 bp)
TCGTCGGGCACTACTACAGATCCGG
LOC_Os09g39170
OsAffx.30202.1.S1_x_at--863--7193Chr10:5493595..5493614 (20 bp)
GTCGGGCACTACTACAGATCCGGGC
NONE
OsAffx.30202.1.S1_x_at--205--94316Chr12:6231741..6231760 (20 bp)
TCGGGCACTACTACAGATCCGGGCT
NONE
OsAffx.30202.1.S1_x_at--952--39716Chr12:6231741..6231761 (21 bp)
CGGGCACTACTACAGATCCGGGCTT
NONE
OsAffx.30202.1.S1_x_at--1055--21316Chr12:6231748..6231772 (25 bp)
ACAGATCCGGGCTTCAGTGACGGGT
NONE
Target Sequence 
TCACGACGTCCCGTTCACGGACAAGGACCTGGAGTCGGAGGAGAGCATGTGGAGCCTGTACGAGAGATGGCGCAGCGTGT
ATGCGTCGTCGTCGTCGTCGGGCACTACTACAGATCCGGGCTTCAGTGACGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30202.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis