Browse Element(s) Details


OsAffx.30204.1.S1_at

Description tigr:9637.m03348
TID=OsAffx.30204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3919011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30204.1.S1_at--183--6831Chr09:22509156..22509180 (25 bp)
GTTTCAACGGGAGAAGCCTGCATCA
LOC_Os09g39190
OsAffx.30204.1.S1_at--85--9071Chr09:22509138..22509162 (25 bp)
TGCATCACATTTCAGAGGACTCCCT
LOC_Os09g39190
OsAffx.30204.1.S1_at--62--8231Chr09:22509082..22509106 (25 bp)
GGCAAGACCTTATCGACGTTCGACG
LOC_Os09g39190
OsAffx.30204.1.S1_at--979--2431Chr09:22508923..22508947 (25 bp)
AAAATGTCTTCAGCTTCTACTCGGG
LOC_Os09g39190
OsAffx.30204.1.S1_at--1144--1991Chr09:22508905..22508929 (25 bp)
ACTCGGGCAGGCGACAGTATTGCAA
LOC_Os09g39190
OsAffx.30204.1.S1_at--710--9851Chr09:22508855..22508879 (25 bp)
TACAGAGAAATTGCGCCACGTGTCC
LOC_Os09g39190
OsAffx.30204.1.S1_at--23--4271Chr09:22508721..22508856 (25 bp)
CCGGCTGTCAGCTCCAATAATAGAA
LOC_Os09g39190
OsAffx.30204.1.S1_at--900--5951Chr09:22508688..22508712 (25 bp)
GAGAATAACTCAGGACTCCGGCTAC
LOC_Os09g39190
OsAffx.30204.1.S1_at--539--6291Chr09:22508502..22508526 (25 bp)
GATGTTGTGGTGCTAACTCTGCGAA
LOC_Os09g39190
OsAffx.30204.1.S1_at--70--2311Chr09:22508451..22508475 (25 bp)
AAAGGACTCTACAGGCTCTTGTTCA
LOC_Os09g39190
OsAffx.30204.1.S1_at--1018--5851Chr09:22507933..22507957 (25 bp)
GAGCCAGTACGCAGCCATAATCAGC
LOC_Os09g39190
Target Sequence 
GTTTCAACGGGAGAAGCCTGCATCACATTTCAGAGGACTCCCTCAACCCGTACGAGCAAGCGATTAGTATCATCGGCAAG
ACCTTATCGACGTTCGACGAAGACAACAGGATCCCATGTTTTGGATTTGGGGACACATCGACGCACGACCAAAATGTCTT
CAGCTTCTACTCGGGCAGGCGACAGTATTGCAATGGTGTTTCTGAAGTTCTAAGGGGATACAGAGAAATTGCGCCACGTG
TCCGGCTGTCAGCTCCAATAATAGAAACTGCAATGAGAATAACTCAGGACTCCGGCTACCAGTATCACATCCTACTGATA
ATAGCTGATGGGCAGGTTCCAAGATGTTGTGGTGCTAACTCTGCGAACAATCGGGATGAGAACTACCTGGAAGAAAGGAC
TCTACAGGCTCTTGTTCAGGCGAGAGAAATGCCTGAAACCGAGAAGGAGGAACAATTTGCTTTAGAAGCGCTGAAGAAGA
TACCGAGCCAGTACGCAGCCATAATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis