Browse Element(s) Details


OsAffx.6530.1.S1_x_at

Description tigr:9637.m03350
TID=OsAffx.6530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nuclear pore protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6530.1.S1_x_at--414--10491Chr09:22533601..22533625 (25 bp)
TTAAATCTGACTCCAAGCTGCAACC
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--956--4751Chr09:22533617..22533641 (25 bp)
GCTGCAACCATAGCATCATCACTAT
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--149--1971Chr09:22533781..22533805 (25 bp)
ACTGTCAGCCAGTCGTGTTGATACA
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--1026--6431Chr09:22533960..22533984 (25 bp)
GATCACTATAATTCTTCCAGCCACC
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--1083--3371Chr09:22533977..22534290 (25 bp)
CAGCCACCGGCCAGACTGAAGAAAT
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--847--9631Chr09:22534334..22534358 (25 bp)
TCAGGCTTGACAACATTGGCTGCAA
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--993--8311Chr09:22534351..22534375 (25 bp)
GGCTGCAATCGTGACATGCATTGTT
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--1074--4931Chr09:22534368..22534392 (25 bp)
GCATTGTTGTTCCAATCGCTACGAT
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--280--3731Chr09:22534386..22534410 (25 bp)
CTACGATTGCGCTCTTCATGAAGTT
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--750--4451Chr09:22534534..22534558 (25 bp)
GCCTCAGCCGTTCATGGAGTACGTG
LOC_Os09g39210
OsAffx.6530.1.S1_x_at--469--8891Chr09:22534557..22534581 (25 bp)
TGAGGAGGACCATCGACGACACGCC
LOC_Os09g39210
Target Sequence 
TTAAATCTGACTCCAAGCTGCAACCATAGCATCATCACTATTGGTGGGAATACTGATGTTGAGTTATTCTGGAATGCTAA
AGATTTACTGTCAGCCAGTCGTGTTGATACAAATGGAAGAGGTGTTCCAAGTCAAATTAGTTATCAGGTTGAAGCACTTA
AAAGGCAATCATTCTATGACAAGATCACTATAATTCTTCCAGCCACCGGCCAGACTGAAGAAATAGAAGTTATCTATGAC
ACTGGAGAAAGAAGAGAGCCATCGACATCAGGCTTGACAACATTGGCTGCAATCGTGACATGCATTGTTGTTCCAATCGC
TACGATTGCGCTCTTCATGAAGTTGCTGGAGAAGAAACCGATCAGAGAGGCACCACCAAGACACGCGACTCCTGCGCCTG
CGTCAGCACCAGCAGCCGCGATGGCTGACCCAGCGTCCCCAGCTACTGGTGAGTTGTCACCTCGTACGCCTCAGCCGTTC
ATGGAGTACGTGAGGAGGACCATCGACGACACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6530.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis