Browse Element(s) Details


Os.52330.1.S1_at

Description gb:AK066427.1
DB_XREF= gi:32976445
TID=Os.52330.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060C12, full insert sequence.
FL= gb:AK066427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3923011/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52330.1.S1_at--73--8391Chr09:22543073..22543097 (25 bp)
GGCGACACCAGCAGATAATGCTGAT
LOC_Os09g39230
Os.52330.1.S1_at--206--3011Chr09:22543089..22543113 (25 bp)
AATGCTGATCGATCGACAAGACTGA
LOC_Os09g39230
Os.52330.1.S1_at--624--4831Chr09:22543115..22543139 (25 bp)
GCTCAAATTCTGTTAGTGACTAATT
LOC_Os09g39230
Os.52330.1.S1_at--971--1111Chr09:22543129..22543153 (25 bp)
AGTGACTAATTGCTTCTTTCTCTTC
LOC_Os09g39230
Os.52330.1.S1_at--194--5371Chr09:22543186..22543210 (25 bp)
GAAGACTCTCTTCCTCATGTTTACT
LOC_Os09g39230
Os.52330.1.S1_at--1022--3731Chr09:22543199..22543223 (25 bp)
CTCATGTTTACTTTCGGTTGCGGAT
LOC_Os09g39230
Os.52330.1.S1_at--277--3971Chr09:22543213..22543237 (25 bp)
CGGTTGCGGATGATACTCTGATTAA
LOC_Os09g39230
Os.52330.1.S1_at--511--7091Chr09:22543241..22543265 (25 bp)
GTCAAAGTTATGCTCGGTGAGGATC
LOC_Os09g39230
Os.52330.1.S1_at--1039--491Chr09:22543263..22543287 (25 bp)
ATCGGAGTAGATGAGATGCCATAGC
LOC_Os09g39230
Os.52330.1.S1_at--314--7651Chr09:22543294..22543318 (25 bp)
GGGAGACAGCGATCCCATCTCATTA
LOC_Os09g39230
Os.52330.1.S1_at--1125--4611Chr09:22543302..22543326 (25 bp)
GCGATCCCATCTCATTACCAGAAAT
LOC_Os09g39230
Target Sequence 
GGCGACACCAGCAGATAATGCTGATCGATCGACAAGACTGATGCTCAAATTCTGTTAGTGACTAATTGCTTCTTTCTCTT
CTTTTTTTTTCTGTCAAATTAGAGAAAGGGGAGGAAGACTCTCTTCCTCATGTTTACTTTCGGTTGCGGATGATACTCTG
ATTAATTAGTCAAAGTTATGCTCGGTGAGGATCGGAGTAGATGAGATGCCATAGCGGAGAGGGGAGACAGCGATCCCATC
TCATTACCAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis