Browse Element(s) Details


Os.10958.1.S1_at

Description gb:AK065725.1
DB_XREF= gi:32975743
TID=Os.10958.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full insert sequence.
FL= gb:AK065725.1 gb:AK120477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3927011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified
LOC_Os09g39310Os.16898.2.S1_at11/119+22594097..22596947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10958.1.S1_at--249--5351Chr09:22566474..22566498 (25 bp)
GAAGTTGACAACCTGACGCGCTGCA
LOC_Os09g39270
Os.10958.1.S1_at--862--2291Chr09:22566433..22566457 (25 bp)
AAATGTTTGTGTTCATCCCTCAGTC
LOC_Os09g39270
Os.10958.1.S1_at--229--551Chr09:22566419..22566443 (25 bp)
ATCCCTCAGTCACCATTAATCGTGG
LOC_Os09g39270
Os.10958.1.S1_at--98--351Chr09:22566376..22566400 (25 bp)
ATAAATTCCAAGTCCAGCTCTGGCC
LOC_Os09g39270
Os.10958.1.S1_at--112--5571Chr09:22566211..22566235 (25 bp)
GAAAGCAATAGGTGACGCTGCCATT
LOC_Os09g39270
Os.10958.1.S1_at--132--5811Chr09:22566198..22566222 (25 bp)
GACGCTGCCATTGAGTTACTGTTGT
LOC_Os09g39270
Os.10958.1.S1_at--32--3631Chr09:22566162..22566186 (25 bp)
CTTGTTTCATCTTCCGAGGACTAGA
LOC_Os09g39270
Os.10958.1.S1_at--635--2031Chr09:22566085..22566109 (25 bp)
ACTAGTTACTTATGGCTTGCTTGCT
LOC_Os09g39270
Os.10958.1.S1_at--140--9071Chr09:22566068..22566092 (25 bp)
TGCTTGCTTGATGTGGGAGTTCTTC
LOC_Os09g39270
Os.10958.1.S1_at--619--11Chr09:22566043..22566067 (25 bp)
ATTGTAGTTCGATGTTCCTTCCTCC
LOC_Os09g39270
Os.10958.1.S1_at--60--4291Chr09:22566023..22566047 (25 bp)
CCTCCTTGCCATTGTGATGCGTAAA
LOC_Os09g39270
Target Sequence 
GAAGTTGACAACCTGACGCGCTGCACAAGTAAATTTTGGTCAAATGTTTGTGTTCATCCCTCAGTCACCATTAATCGTGG
ATAAGGTGCTTACACAGAATAAATTCCAAGTCCAGCTCTGGCCTTGTCAACCGATCATCCTCGCAATCGAGATCTTCGGG
GGTCTGATATTTGTATTTTTGGTTCAATCGAAGGGAAATGATCTTTCTGTTCATAGAAGGCCAGCTTGTATGTTAAAAAG
GAGTGTATTGTTTCATTACGAGGGAAAGCAATAGGTGACGCTGCCATTGAGTTACTGTTGTTTTTTGGCAAACTTGTTTC
ATCTTCCGAGGACTAGAGATTTTGTACCTAAAAAGAACTGATAATAGAACATCATGGAGGCAGAATTAAACTAGTTACTT
ATGGCTTGCTTGCTTGATGTGGGAGTTCTTCATTGTAGTTCGATGTTCCTTCCTCCTTGCCATTGTGATGCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis