Browse Element(s) Details


OsAffx.6532.1.S1_at

Description tigr:9637.m03358
TID=OsAffx.6532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified
LOC_Os09g39310Os.16898.2.S1_at11/119+22594097..22596947expressed protein
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6532.1.S1_at--419--1751Chr09:22577132..22577156 (25 bp)
ACCTACGCCTCTCAAGGCTGGATTG
LOC_Os09g39280
OsAffx.6532.1.S1_at--221--911Chr09:22577118..22577142 (25 bp)
AGGCTGGATTGCTGCCACTTGGAGT
LOC_Os09g39280
OsAffx.6532.1.S1_at--358--8471Chr09:22577063..22577087 (25 bp)
TGGCGCCAGGACTGCCAAATCTCTG
LOC_Os09g39280
OsAffx.6532.1.S1_at--498--3771Chr09:22577037..22577061 (25 bp)
CTCTCATCTTGCTGTTGATCACAAC
LOC_Os09g39280
OsAffx.6532.1.S1_at--426--9111Chr09:22576996..22577020 (25 bp)
TGCTGCCTGAGCTTGGCACACCTCA
LOC_Os09g39280
OsAffx.6532.1.S1_at--688--8491Chr09:22576900..22576924 (25 bp)
TGGCTAAGGTCGACCTCTGGGATGA
LOC_Os09g39280
OsAffx.6532.1.S1_at--280--9591Chr09:22576797..22576821 (25 bp)
TCTTGGCATTAGCTCTGCCTACATA
LOC_Os09g39280
OsAffx.6532.1.S1_at--1133--7931Chr09:22576765..22576789 (25 bp)
GGATATCAGACTATCTTCCTACGGC
LOC_Os09g39280
OsAffx.6532.1.S1_at--421--8811Chr09:22576001..22576025 (25 bp)
TGTTGACCGTGCCTTCTCACAAGAA
LOC_Os09g39280
OsAffx.6532.1.S1_at--954--2711Chr09:22575978..22576002 (25 bp)
AAGCAGACCCGTGTGGTGCTGTCTA
LOC_Os09g39280
OsAffx.6532.1.S1_at--413--7311Chr09:22575963..22575987 (25 bp)
GTGCTGTCTAATCCCTCTTGGAAAG
LOC_Os09g39280
Target Sequence 
ACCTACGCCTCTCAAGGCTGGATTGCTGCCACTTGGAGTGCACCACCCACCAATCCTTGGAAGCAAGGTTGGCGCCAGGA
CTGCCAAATCTCTGCCTCTCATCTTGCTGTTGATCACAACACCATGAATTTTGAGTTGCTGCCTGAGCTTGGCACACCTC
AGCAAACCTTGGAGAGACTTCACGTGGGCCTTCCAAAGCTCAGCTTGCACTCTGATGACATTGTTTGCTTCATGGCTAAG
GTCGACCTCTGGGATGACCAGAATGCATGGGTGCTTGCTGTTGACATGAAGAACAAGAGGCTAAAAGATGTGGCCGAGTT
TGGCGCAGGAAGAACTCTTGGCATTAGCTCTGCCTACATAAGCAGTAGGATATCAGACTATCTTCCTACGGCTCCAGGTT
TAAAGGGTAACCTGAAACGACAAGGGGTTGTGTTGACCGTGCCTTCTCACAAGAAGCAGACCCGTGTGGTGCTGTCTAAT
CCCTCTTGGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis