Browse Element(s) Details


OsAffx.30205.1.S1_at

Description tigr:9637.m03362
TID=OsAffx.30205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CTR1-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3932011/11CTR1-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified
LOC_Os09g39310Os.16898.2.S1_at11/119+22594097..22596947expressed protein
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30205.1.S1_at--341--8251Chr09:22599734..22599758 (25 bp)
GGCACATACATCTCTCAGGGTTGGA
LOC_Os09g39320
OsAffx.30205.1.S1_at--706--1051Chr09:22599718..22599742 (25 bp)
AGGGTTGGACTCTTGCCACTTGGAG
LOC_Os09g39320
OsAffx.30205.1.S1_at--632--2891Chr09:22599667..22599691 (25 bp)
AAGGGTGGCGCCAGGATTGCAACCT
LOC_Os09g39320
OsAffx.30205.1.S1_at--959--10651Chr09:22599636..22599660 (25 bp)
TTCCGATCTCTCTGTTGATGCCAAC
LOC_Os09g39320
OsAffx.30205.1.S1_at--622--10531Chr09:22599601..22599625 (25 bp)
TTCAGTTACTGCCTAAGCTCTCGGA
LOC_Os09g39320
OsAffx.30205.1.S1_at--865--2691Chr09:22599587..22599611 (25 bp)
AAGCTCTCGGATCACCAACAGGGCA
LOC_Os09g39320
OsAffx.30205.1.S1_at--101--4391Chr09:22599505..22599529 (25 bp)
CCAATGACATTGTTTGCCTCATGGC
LOC_Os09g39320
OsAffx.30205.1.S1_at--940--6251Chr09:22599413..22599437 (25 bp)
GATGTGGCTCAGTTTGGCGCTGAAA
LOC_Os09g39320
OsAffx.30205.1.S1_at--926--3751Chr09:22599385..22599409 (25 bp)
CTCTTGGCATTAGCTTGGTCTACAT
LOC_Os09g39320
OsAffx.30205.1.S1_at--458--5231Chr09:22599344..22599368 (25 bp)
GAATATCTTCGTACGGCTCCAGGTA
LOC_Os09g39320
OsAffx.30205.1.S1_at--259--1391Chr09:22598590..22598614 (25 bp)
AGACCCGTATGGTTCATCTGTCTAC
LOC_Os09g39320
Target Sequence 
GGCACATACATCTCTCAGGGTTGGACTCTTGCCACTTGGAGTGCACCAGCCACCAATCCTTGGAAGCAAGGGTGGCGCCA
GGATTGCAACCTCTCTGCTTCCGATCTCTCTGTTGATGCCAACACCATGAATTTTCAGTTACTGCCTAAGCTCTCGGATC
ACCAACAGGGCACACCTCAGCAAACCTTGGAGAGACTTCACGTGGGCCATCCAACGCTCAGCTTGCAATCCAATGACATT
GTTTGCCTCATGGCCAAGGTCGACCAATGGGACGACCATGCTTGGGTGCTTGCTGTCGACATGAAGAACAGGAGGCTAAA
AGATGTGGCTCAGTTTGGCGCTGAAAGAACTCTTGGCATTAGCTTGGTCTACATCAGCAGTATGATATCAGAATATCTTC
GTACGGCTCCAGGTATAAAGGGTAACCTAAAACGACAAGGGGTTGTGTTCACCGTACCCTCTCACAAGAAGCAGACCCGT
ATGGTTCATCTGTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis