Browse Element(s) Details


Os.16898.2.S1_at

Description gb:AK061768.1
DB_XREF= gi:32971786
TID=Os.16898.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C01, full insert sequence.
FL= gb:AK105885.1 gb:AK098902.1 gb:AK061768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3931011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified
LOC_Os09g39310Os.16898.2.S1_at11/119+22594097..22596947expressed protein
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16898.2.S1_at--670--6871Chr09:22594606..22594630 (25 bp)
GTATTGCTGTTGTGTTAGACTTCTT
LOC_Os09g39310
Os.16898.2.S1_at--578--5691Chr09:22594589..22594613 (25 bp)
GACTTCTTATTGCTTGATTATCTAC
LOC_Os09g39310
Os.16898.2.S1_at--1010--8751Chr09:22594483..22594507 (25 bp)
TGTAGTTTATGCCTCTGTTTATTTC
LOC_Os09g39310
Os.16898.2.S1_at--633--7911Chr09:22594443..22594467 (25 bp)
GGTTGTAAACCGTATGGTCCTCTCG
LOC_Os09g39310
Os.16898.2.S1_at--249--791Chr09:22594398..22594422 (25 bp)
ATGTGAGCCTCCTGGTAGCATTGGG
LOC_Os09g39310
Os.16898.2.S1_at--535--4931Chr09:22594381..22594405 (25 bp)
GCATTGGGCGTCTTAAGTCCGATTA
LOC_Os09g39310
Os.16898.2.S1_at--1114--5451Chr09:22594278..22594302 (25 bp)
GAACTCTGGGAGCAGTACAACCCGA
LOC_Os09g39310
Os.16898.2.S1_at--1121--2211Chr09:22594186..22594210 (25 bp)
ACAAGTAGCAGAGTGTCTCTCTCTA
LOC_Os09g39310
Os.16898.2.S1_at--832--9511Chr09:22594171..22594195 (25 bp)
TCTCTCTCTATTGCACTCATTGATG
LOC_Os09g39310
Os.16898.2.S1_at--227--6311Chr09:22594150..22594174 (25 bp)
GATGAAACCTTAGTTGACGCTTACA
LOC_Os09g39310
Os.16898.2.S1_at--25--7931Chr09:22594125..22594149 (25 bp)
GGATTGTTTCTGCTGTAATTCTACT
LOC_Os09g39310
Target Sequence 
GTATTGCTGTTGTGTTAGACTTCTTATTGCTTGATTATCTACTGTTTTGTCAGTTCTATTTACGAGGGGGTATTGCTGGT
ACTTTGTACCGAGGATGACTATCTAAGCACNAAAATCTTAAGAGTGTAGTTTATGCCTCTGTTTATTTCTNTATCAATGT
AGCGAGGTTGTAAACCGTATGGTCCTCTCGCTGGTGTCAANTTGCTCNCAATGTGAGCCTCCTGGTAGCATTGGGCGTCT
TAAGTCCGATTAATCTGGAAGCTGATTACATGGATTTTGGATGAGGAGGGGCATGGTTAATGGTTAGAGCATGCATGATG
CAAATGTCTGGAACTCTGGGAGCAGTACAACCCGATGAAAAAGAATATTAAACTTGTCTAGCTCTTCAAGTATTGAGGAT
TTAGTACTTGTTAATTTCAGGTACAAGTAGCAGAGTGTCTCTCTCTATTGCACTCATTGATGAAACCTTAGTTGACGCTT
ACAGGATTGTTTCTGCTGTAATTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16898.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis