Browse Element(s) Details


Os.53474.1.S1_at

Description gb:AK072866.1
DB_XREF= gi:32982889
TID=Os.53474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142B09, full insert sequence.
FL= gb:AK072866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3933410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53474.1.S1_at--896--8651NONE
TGTGGCGTCGGATGAGTCTCCACCG
NONE
Os.53474.1.S1_at--959--4371Chr09:22622590..22622614 (25 bp)
CCAAGAGCGCGGACGGGATTGATAT
LOC_Os09g39334
Os.53474.1.S1_at--423--7931Chr09:22622605..22622629 (25 bp)
GGATTGATATTCGTCGTCTTTCTTC
LOC_Os09g39334
Os.53474.1.S1_at--190--271Chr09:22622701..22622725 (25 bp)
ATATGAGGCATGAGGTCAACCCTTT
LOC_Os09g39334
Os.53474.1.S1_at--219--6151Chr09:22622712..22622736 (25 bp)
GAGGTCAACCCTTTGGGATCCATAC
LOC_Os09g39334
Os.53474.1.S1_at--410--10851Chr09:22623005..22623029 (25 bp)
TTGGACAACAACATCGAGCGCCACC
LOC_Os09g39334
Os.53474.1.S1_at--694--3751Chr09:22623029..22623053 (25 bp)
CTCCTCGGTTCACGGTAAAATCCAT
LOC_Os09g39334
Os.53474.1.S1_at--444--4311Chr09:22623066..22623090 (25 bp)
CCTTTCTATTCCTCCTATCTAATGA
LOC_Os09g39334
Os.53474.1.S1_at--1064--10291Chr09:22623107..22623131 (25 bp)
TTTCTCCTCATCTCCATTATGGGTA
LOC_Os09g39334
Os.53474.1.S1_at--682--10111Chr09:22623124..22623148 (25 bp)
TATGGGTACATCTCTGTGAAGCTAT
LOC_Os09g39334
Os.53474.1.S1_at--180--5151Chr09:22623166..22623190 (25 bp)
GCAACACTAATATGCATGCCTTTGT
LOC_Os09g39334
Target Sequence 
TGTGGCGTCGGATGAGTCTCCACCGCGCCACTGTTGGCGGCCAAGAGCGCGGACGGGATTGATATTCGTCGTCTTTCTTC
TCTTGCTCCGCCGTAGGCTCGCTGGCCCCGTTACCGGGAGGCGTCGAGAAGGGATCGATTGGAAGGGGAAGATATGAGGC
ATGAGGTCAACCCTTTGGGATCCATACCGCCAACCATCGCTCTACGTCGCGCCTTCCCCATCACCTCGTCAATCGGAAGC
ATCGCCGCGTCTAGCCCGAAGACCGGCCGTCGACCACTCAACAGCCGGCCCGTGTCTGCATGCAGCCGTGCACCGAGCCC
ACGCAGTTCCCAATTGCCACCACCACATCTCAGGCCACTTGGACAACAACATCGAGCGCCACCTCCTCGGTTCACGGTAA
AATCCATTTTCCCCATCCTCCTTTCTATTCCTCCTATCTAATGATATTTTGAGGTTTTTTTTTCTCCTCATCTCCATTAT
GGGTACATCTCTGTGAAGCTATAAAATACAGAGAGATTAGCAACACTAATATGCATGCCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis