Browse Element(s) Details


Os.6239.1.S1_at

Description gb:D85764.1
DB_XREF= gi:4666286
TID=Os.6239.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.6239 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for cytosolic monodehydroascorbate reductase, complete cds.
PROD=cytosolic monodehydroascorbate reductase
FL= gb:AK071558.1 gb:D85764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g393808/11Monodehydroascorbate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6239.1.S1_at--488--1111Chr09:22647027..22647051 (25 bp)
AGTGTTCCTGGAGTCTATGCTGTCG
LOC_Os09g39380
Os.6239.1.S1_at--862--671Chr09:22647727..22647751 (25 bp)
ATGACTATCTGCCATACTTCTACTC
LOC_Os09g39380
Os.6239.1.S1_at--537--3971Chr09:22647753..22647777 (25 bp)
CGGTCATTCGACCTGGGATGGCAAT
LOC_Os09g39380
Os.6239.1.S1_at--943--7651Chr09:22647767..22647791 (25 bp)
GGGATGGCAATTCTACGGCGACAAC
LOC_Os09g39380
Os.6239.1.S1_at--981--5631Chr09:22647798..22647822 (25 bp)
GACACCATCCTGTTCGGAGACAGTG
LOC_Os09g39380
Os.6239.1.S1_at--433--8431Chr09:22647920..22647944 (25 bp)
GGCCATTGCCAAGGTCGCGAAAACT
LOC_Os09g39380
Os.6239.1.S1_at--492--4531Chr09:22647950..22647974 (25 bp)
GCCCGTTGCCAACATAGAGGAGCTC
LOC_Os09g39380
Os.6239.1.S1_at--618--5291Chr09:22647981..22648005 (25 bp)
GAAGGCCTCCAGTTCGCCAGCAAAA
LOC_Os09g39380
Os.6239.1.S1_at--1036--7871Chr09:22648058..22648082 (25 bp)
GGTTTTCTGATTGTGATGCGTCTGT
NONE
Os.6239.1.S1_at--233--1971Chr09:22648090..22648114 (25 bp)
ACTCCTCTTAAATATGGGCACTTGC
NONE
Os.6239.1.S1_at--867--7591Chr09:22648105..22648129 (25 bp)
GGGCACTTGCTATAGCTGCTGAGAT
NONE
Target Sequence 
AGTGTTCCTGGAGTCTATGCTGTCGGTGATGTGGCCACCTTCCCCATGAAGATGTACAATGAGTTGAGGAGAGTGGAACA
TGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGT
ATGACTATCTGCCATACTTCTACTCCCGGTCATTCGACCTGGGATGGCAATTCTACGGCGACAACGTTGGCGACACCATC
CTGTTCGGAGACAGTGACCCGACCTCTGCCAAGCCCAAGTTCGGGTCCTACTGGATCAAGGACGGCAAGGTGTTGGGTGC
CTTCCTGGAGGGTGGGTCACCTGATGAGAACAAGGCCATTGCCAAGGTCGCGAAAACTCAGCCGCCCGTTGCCAACATAG
AGGAGCTCAAGAAGGAAGGCCTCCAGTTCGCCAGCAAAATATGAGATTTTTGTAGTTTTGATGTACATTTCCACATGGTA
CTCCCCCTATTGGTTTTCTGATTGTGATGCGTCTGTACTCTGTACTCCTCTTAAATATGGGCACTTGCTATAGCTGCTGA
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis