Browse Element(s) Details


Os.4702.1.S1_at

Description gb:AK072521.1
DB_XREF= gi:32982544
TID=Os.4702.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131B06, full insert sequence.
FL= gb:AK072521.1 gb:AY345241.1 gb:AK104879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3940011/11Histidine-containing phosphotransfer protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4702.1.S1_at--622--5551Chr09:22655562..22655586 (25 bp)
GAAACGACTTCTATGATCTGCGCAA
LOC_Os09g39400
Os.4702.1.S1_at--691--5131Chr09:22656074..22656098 (25 bp)
GCAAATCCAGGCTTATGATCCCAAG
LOC_Os09g39400
Os.4702.1.S1_at--645--9731Chr09:22656177..22656201 (25 bp)
TCAATGGGCTTCTGGCTTAGAGTGT
LOC_Os09g39400
Os.4702.1.S1_at--287--4571Chr09:22656204..22656228 (25 bp)
GCGCGTGTGCAGAATCAAATCATTT
LOC_Os09g39400
Os.4702.1.S1_at--995--8571Chr09:22656228..22656252 (25 bp)
TGGTTTGAGGCTTCATGCTTCCAAC
LOC_Os09g39400
Os.4702.1.S1_at--985--4371Chr09:22656248..22656272 (25 bp)
CCAACTTTGAGCTCATAACCCTTTA
LOC_Os09g39400
Os.4702.1.S1_at--510--1771Chr09:22656308..22656332 (25 bp)
ACCTGTTACCTGTCTGTGTTCGGTT
LOC_Os09g39400
Os.4702.1.S1_at--1129--2371Chr09:22656348..22656372 (25 bp)
AAACTCTTACTGGTTGTCTGGTGAC
LOC_Os09g39400
Os.4702.1.S1_at--629--7171Chr09:22656363..22656387 (25 bp)
GTCTGGTGACTTGTTTAGCTGGCTT
LOC_Os09g39400
Os.4702.1.S1_at--499--2831Chr09:22656448..22656472 (25 bp)
AAGTCTTGATGCTGGGTGGTATACA
LOC_Os09g39400
Os.4702.1.S1_at--512--5511Chr09:22656511..22656535 (25 bp)
GAACAAGCATCCGTATTCAGTTTTG
LOC_Os09g39400
Target Sequence 
GAAACGACTTCTATGATCTGCGCAACAAGTTTCAGACTATGCTTCAGCTGGAGCAGCAAATCCAGGCTTATGATCCCAAG
CAGCAATAATTGAAGCAAAAGAGTGTAGCTGCATGTGATCTCACATGATAAATGTATCTTTGAAGATGTAGACCATGTTC
AATGGGCTTCTGGCTTAGAGTGTGTGCGCGTGTGCAGAATCAAATCATTTGGTTTGAGGCTTCATGCTTCCAACTTTGAG
CTCATAACCCTTTAATTGTTAGTGACAACTGATCGTCTAGTGTCGATGNTACCTGTTACCTGTCTGTGTTCGGTTGTCTG
CCACCTTTGCAAACTCTTACTGGTTGTCTGGTGACTTGTTTAGCTGGCTTGTGACTTTAGGAAGGGAAAGTGTGTGAAAT
TGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGT
TTAATATCAACATGAACAAGCATCCGTATTCAGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis