Browse Element(s) Details


Os.10528.1.S1_s_at

Description gb:AU166630
DB_XREF= gi:12405029
DB_XREF=AU166630
CLONE=C30380
TID=Os.10528.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10528 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48386 (A.thaliana) T48386 hypothetical protein F17C15.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3943011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10528.1.S1_s_at--269--8111Chr09:22671401..22671425 (25 bp)
GGACGAAGCCGGCAACAAGCAGTAC
LOC_Os09g39430
Os.10528.1.S1_s_at--279--5151Chr09:22671390..22671414 (25 bp)
GCAACAAGCAGTACACGGTGTGCGA
LOC_Os09g39430
Os.10528.1.S1_s_at--1156--1151Chr09:22671381..22671405 (25 bp)
AGTACACGGTGTGCGACGACCCGGA
LOC_Os09g39430
Os.10528.1.S1_s_at--1080--4251Chr09:22671361..22671385 (25 bp)
CCGGAGCGGCACTTCTACTGGGACG
LOC_Os09g39430
Os.10528.1.S1_s_at--668--4291Chr09:22671269..22671293 (25 bp)
CCTCTCCACCTGAACGAACGAATGA
LOC_Os09g39430
Os.10528.1.S1_s_at--359--5271Chr09:22671250..22671274 (25 bp)
GAATGAATACTCACCAACCAGCTTT
LOC_Os09g39430
Os.10528.1.S1_s_at--205--2651Chr09:22671235..22671259 (25 bp)
AACCAGCTTTCTCATTTCCGACGAA
LOC_Os09g39430
Os.10528.1.S1_s_at--345--10551Chr09:22671227..22671251 (25 bp)
TTCTCATTTCCGACGAAATTCCGCG
LOC_Os09g39430
Os.10528.1.S1_s_at--1142--3571Chr09:22671223..22671247 (25 bp)
CATTTCCGACGAAATTCCGCGAAAT
LOC_Os09g39430
Os.10528.1.S1_s_at--1154--6371Chr09:22671132..22671156 (25 bp)
GATCGAAATTCAGTAGATTTGCTCC
LOC_Os09g39430
Os.10528.1.S1_s_at--968--10551Chr09:22671086..22671110 (25 bp)
TTCTTCGTCTTCTTGAACAACTTTT
LOC_Os09g39430
Target Sequence 
GGACGAAGCCGGCAACAAGCAGTACACGGTGTGCGACGACCCGGAGCGGCACTTCTACTGGGACGACGTGCACCCCACGC
AGGCCGCCTGGGCCGCCGTCGCCCAAGCCTTCACCCCCGCCATCCACCGCTTCCTCTCCACCTGAACGAACGAATGAATA
CTCACCAACCAGCTTTCTCATTTCCGACGAAATTCCGCGAAATTTCGACGTTTCTATATGGCTCGGAATTAAGTTTCGAT
TCGAATTTCGAAGGTTAAACAGTAGATTTGATCGAAATTCAGTAGATTTGCTCCNTGCACTTCTTCTTCTTCTTCTTCTT
CGTCTTCTTGAACAACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10528.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis