Browse Element(s) Details


Os.6765.1.S1_a_at

Description gb:AK068800.1
DB_XREF= gi:32978825
TID=Os.6765.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158P04, full insert sequence.
FL= gb:AK121487.1 gb:AK068800.1 gb:AK060775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3939011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6765.1.S1_a_at--531--10391Chr09:22650774..22650798 (25 bp)
TTTTGCTGGACCTCCTCTGAATACC
LOC_Os09g39390
Os.6765.1.S1_a_at--593--9011Chr09:22650791..22650815 (25 bp)
TGAATACCCCATCTTTGCAGAAGTA
LOC_Os09g39390
Os.6765.1.S1_a_at--485--2831Chr09:22650811..22650916 (25 bp)
AAGTATAAGCGGATGGTGGATGCCT
LOC_Os09g39390
Os.6765.1.S1_a_at--720--9231Chr09:22650935..22650959 (25 bp)
TCCAGGCTTTGCTTCAGACGTTGAA
LOC_Os09g39390
Os.6765.1.S1_a_at--706--6891Chr09:22650964..22650988 (25 bp)
GTATCATTGAAGCATGGTGTTTCTA
LOC_Os09g39390
Os.6765.1.S1_a_at--816--8611Chr09:22650978..22651002 (25 bp)
TGGTGTTTCTATATCAACTGTTGCT
LOC_Os09g39390
Os.6765.1.S1_a_at--835--6671Chr09:22650997..22651021 (25 bp)
GTTGCTGTGAGATACATACTGAACC
LOC_Os09g39390
Os.6765.1.S1_a_at--258--1731Chr09:22651146..22651167 (22 bp)
ACCAGACATCTGTTGCGGGTTCAAT
LOC_Os09g39390
Os.6765.1.S1_a_at--232--8651Chr09:22651182..22651206 (25 bp)
TGGGACTCTCTGAACACATAAAAGA
LOC_Os09g39390
Os.6765.1.S1_a_at--75--5671Chr09:22651244..22651268 (25 bp)
GACATGAACAGCATCACTGAAGCAT
LOC_Os09g39390
Os.6765.1.S1_a_at--595--6431Chr09:22651481..22651505 (25 bp)
GATCAGTGTGTAAACCAACCTCCCA
LOC_Os09g39390
Target Sequence 
TTTTGCTGGACCTCCTCTGAATACCCCATCTTTGCAGAAGTATAAGCGGATGGTGGATGCCTGGGGTGGCTGGAGCCTGT
TCCAGGCTTTGCTTCAGACGTTGAAGAAAGTATCATTGAAGCATGGTGTTTCTATATCAACTGTTGCTGTGAGATACATA
CTGAACCAGACATCTGTTGCGGGTTCAATGGTGGGTGTGAGACTGGGACTCTCTGAACACATAAAAGACACCAACGCCAT
CTTCTCGCTTGAATTAGATGAAGAGGACATGAACAGCATCACTGAAGCATCGAATAAGGGAAGAAATCTTATGGATATAA
TAGGCGATTGTGGAGACGAATACAGAGCATAATTGTGCAGAGAGATAAAGAGAGAGAGAGGCAGAGGGGGTAGACCAATG
AGGCGTGTGCCTGCCAGTTTTCTGGAGTTCTGAAATCTGATCTGTTTTGTCATGAACGTAGTGTGCAGCAGCTATCTGAT
CTTCCAGTATACTACTACTCCAGATCAGTGTGTAAACCAACCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6765.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis