Browse Element(s) Details


Os.47472.1.S1_at

Description gb:AK071956.1
DB_XREF= gi:32981979
TID=Os.47472.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013084H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084H10, full insert sequence.
FL= gb:AK061142.1 gb:AK071956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g394108/11Male sterility protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016628molecular_functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47472.1.S1_at--1118--2111Chr09:22664411..22664435 (25 bp)
ACATGGAGAAGCTTCGGCTGTCCAT
LOC_Os09g39410
Os.47472.1.S1_at--988--2091Chr09:22664522..22664546 (25 bp)
ACATCCCCGGCGTCATGAAGTACGT
LOC_Os09g39410
Os.47472.1.S1_at--648--6991Chr09:22664541..22664565 (25 bp)
GTACGTCCTCAACAAGTGATCCATT
LOC_Os09g39410
Os.47472.1.S1_at--262--4751Chr09:22664646..22664670 (25 bp)
GCTGATTGTATACTCGATCCATCCA
LOC_Os09g39410
Os.47472.1.S1_at--799--31Chr09:22664684..22664708 (25 bp)
ATTGATTGATCACCGTACCGTACGT
LOC_Os09g39410
Os.47472.1.S1_at--199--11Chr09:22664701..22664725 (25 bp)
CCGTACGTACGTGTTAAGTTATGCT
LOC_Os09g39410
Os.47472.1.S1_at--1060--5251Chr09:22664740..22664764 (25 bp)
GAATCGATTTATAAGCTTCTGCTGC
LOC_Os09g39410
Os.47472.1.S1_at--21--3851Chr09:22664761..22664785 (25 bp)
CTGCTAGTGGTGGTGAGGTATTTTA
LOC_Os09g39410
Os.47472.1.S1_at--367--6471Chr09:22664857..22664881 (25 bp)
GATAACATCGATCCATACTCTTGTT
NONE
Os.47472.1.S1_at--939--6671Chr09:22664879..22664903 (25 bp)
GTTGCTGCCTGTATGATCTGTGTTA
NONE
Os.47472.1.S1_at--303--491Chr09:22664894..22664918 (25 bp)
ATCTGTGTTATTTCTTCTGTCGTAA
NONE
Target Sequence 
ACATGGAGAAGCTTCGGCTGTCCATGGCCACGCCGCCGTCGTCCGCCGCCGCCGCCCTCTTCAACCTCGACCCCAAGAAC
ATCGACTGGGACGACTACTTCTACAGGATCCACATCCCCGGCGTCATGAAGTACGTCCTCAACAAGTGATCCATTCCATC
CATCCATCATACGTAAGATTATTGTTCTTCTTCTACCTGGCTGCTGCTGCTTACAATGAAGAAGCTAGCTAGCTAGCTGA
TTGTATACTCGATCCATCCATCCATCCAACATTATTGATTGATCACCGTACCGTACGTACGTGTTAAGTTATGCTTATAA
TTCATCACAGAATCGATTTATAAGCTTCTGCTGCTAGTGGTGGTGAGGTATTTTATTTATTGTTGAAACAAATCAAGTCA
TCTTGTTAAACATTTCTCTTATTATTANTTAAGATTGCTCTTGNTCGATAACATCGATCCATACTCTTGTTGCTGCCTGT
ATGATCTGTGTTATTTCTTCTGTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis