Browse Element(s) Details


OsAffx.18058.1.S1_at

Description tigr:9637.m03377
TID=OsAffx.18058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g394509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18058.1.S1_at--814--3771Chr09:22680931..22680955 (25 bp)
CTCGACAACCATGAATTGAACCTAG
LOC_Os09g39450
OsAffx.18058.1.S1_at--542--8951Chr09:22680942..22680966 (25 bp)
TGAATTGAACCTAGAAGACCTTGAG
LOC_Os09g39450
OsAffx.18058.1.S1_at--1008--1731Chr09:22680950..22680974 (25 bp)
ACCTAGAAGACCTTGAGGATGCCAA
LOC_Os09g39450
OsAffx.18058.1.S1_at--770--7971Chr09:22680966..22680990 (25 bp)
GGATGCCAAGATGCAACAATCTCGA
LOC_Os09g39450
OsAffx.18058.1.S1_at--219--6331NONE
GATGCAACAATCTCGACGGCCCAAA
NONE
OsAffx.18058.1.S1_at--253--451NONE
ATCTCGACGGCCCAAAATATCCCGT
NONE
OsAffx.18058.1.S1_at--705--2431Chr09:22681832..22681856 (25 bp)
AAAATATCCCGTCCGTTTGCTCCAT
LOC_Os09g39450
OsAffx.18058.1.S1_at--190--8451Chr09:22681863..22681887 (25 bp)
GGCCACAGCCCAAGGCCATTACTGG
LOC_Os09g39450
OsAffx.18058.1.S1_at--337--2951Chr09:22681874..22681898 (25 bp)
AAGGCCATTACTGGGCTGGGCTTGA
LOC_Os09g39450
OsAffx.18058.1.S1_at--491--8651Chr09:22681890..22681914 (25 bp)
TGGGCTTGACCTTCACAATCCGAGA
LOC_Os09g39450
OsAffx.18058.1.S1_at--789--3191Chr09:22681905..22681929 (25 bp)
CAATCCGAGATGCAGTACTAAGACT
LOC_Os09g39450
Target Sequence 
CTCGACAACCATGAATTGAACCTAGAAGACCTTGAGGATGCCAAGATGCAACAATCTCGACGGCCCAAAATATCCCGTCC
GTTTGCTCCATCAGCACGGCCACAGCCCAAGGCCATTACTGGGCTGGGCTTGACCTTCACAATCCGAGATGCAGTACTAA
GACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis