Browse Element(s) Details


Os.4188.1.S1_at

Description gb:AB029060.2
DB_XREF= gi:5821431
GEN=OsIF1-2
TID=Os.4188.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4188 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsIF1-2 mRNA for F1F0-ATPase inhibitor protein, complete cds.
PROD=F1F0-ATPase inhibitor protein
FL= gb:AB029060.2 gb:AK059442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3955011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4188.1.S1_at--872--8051Chr09:22704682..22704706 (25 bp)
GGAGAGCAAGCTTCAACCGCAGGTG
LOC_Os09g39550
Os.4188.1.S1_at--506--2811Chr09:22704750..22704774 (25 bp)
AAGATCTGCTGGTGTGTCAACTGAC
LOC_Os09g39550
Os.4188.1.S1_at--1089--5471Chr09:22704783..22704807 (25 bp)
GAACTATGCTGTCCTGGCAGGCACT
LOC_Os09g39550
Os.4188.1.S1_at--304--1971Chr09:22704805..22704829 (25 bp)
ACTGTTGCTGCTTTGAGTGGCCTGG
LOC_Os09g39550
Os.4188.1.S1_at--1064--7711Chr09:22704829..22704853 (25 bp)
GGGTGGTATCTCTTGTCAAAGCCTA
LOC_Os09g39550
Os.4188.1.S1_at--118--8891Chr09:22704913..22704937 (25 bp)
TGAGTTTCACCCTGTTTTACTTGTT
LOC_Os09g39550
Os.4188.1.S1_at--1145--5491Chr09:22704952..22704976 (25 bp)
GAACACACTGCACTGAGTTTCCTAT
LOC_Os09g39550
Os.4188.1.S1_at--605--2391Chr09:22704987..22705011 (25 bp)
AAACTTTCAAGTATGCACCCGAGAT
LOC_Os09g39550
Os.4188.1.S1_at--153--10131Chr09:22705011..22705035 (25 bp)
TATGTTCTCAGTTCTTCATGCCCTG
LOC_Os09g39550
Os.4188.1.S1_at--1135--10751Chr09:22705038..22705062 (25 bp)
TTGACTGTTGGCACTGTTCTCTGAT
LOC_Os09g39550
Os.4188.1.S1_at--958--5531Chr09:22705110..22705134 (25 bp)
GAAATCCCGTTGTTTCTAGTCCTTG
LOC_Os09g39550
Target Sequence 
GGAGAGCAAGCTTCAACCGCAGGTGCNTGCGGCTAACGCTGTGAAGACTGGAAGCGGCTCAACGGAGTCAAGATCTGCTG
GTGTGTCAACTGACAAAAACAGGAACTATGCTGTCCTGGCAGGCACTGTTGCTGCTTTGAGTGGCCTGGGGTGGTATCTC
TTGTCAAAGCCTAAGAAGTCTGAAGATATAGTGGACTGAAGGTGGTTAATGAGATCCTAGACGGTCTGTCATTGAGTTTC
ACCCTGTTTTACTTGTTTAGAAATAAATGCTGAACACACTGCACTGAGTTTCCTATAGCATCACTAAAACTTTCAAGTAT
GCACCCGAGATATGTTCTCAGTTCTTCATGCCCTGTTTTGACTGTTGGCACTGTTCTCTGATGCTGCATCCTTTTGATTG
AAGAGGAATTCGGATACAAGATAGTACATGAAATCCCGTTGTTTCTAGTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis