Browse Element(s) Details


Os.49318.1.S1_at

Description gb:AK063384.1
DB_XREF= gi:32973402
TID=Os.49318.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G05, full insert sequence.
FL= gb:AK063384.1 gb:AK070608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3959011/11Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006378biological_processmRNA polyadenylylation
GO:0006379biological_processmRNA cleavage
GO:0008152biological_processmetabolism
GO:0005847cellular_componentmRNA cleavage and polyadenylation specificity factor complex
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49318.1.S1_at--1037--5211Chr09:22720421..22720445 (25 bp)
GAATTTGCTGGTGGTGCTTTACGGT
LOC_Os09g39590
Os.49318.1.S1_at--494--331Chr09:22720389..22720413 (25 bp)
ATACATCACACTGCGCAAGATTGGT
LOC_Os09g39590
Os.49318.1.S1_at--913--5051Chr09:22720139..22720163 (25 bp)
GCAGCACAGGTTCCCAGCAGATTGT
LOC_Os09g39590
Os.49318.1.S1_at--390--1251Chr09:22720121..22720145 (25 bp)
AGATTGTGATCGAAGGGCCCCTGTG
LOC_Os09g39590
Os.49318.1.S1_at--607--8411Chr09:22720106..22720130 (25 bp)
GGCCCCTGTGTGAGGACTATTACAA
LOC_Os09g39590
Os.49318.1.S1_at--1000--10611Chr09:22720079..22720103 (25 bp)
TTCGTGAGCTTCTTTACTCTCAGTT
LOC_Os09g39590
Os.49318.1.S1_at--204--9911Chr09:22720065..22720089 (25 bp)
TACTCTCAGTTCTACTTGTTGTAAA
LOC_Os09g39590
Os.49318.1.S1_at--740--451Chr09:22720018..22720042 (25 bp)
ATCTCTTTCCTTTCGTGTTGATGTT
LOC_Os09g39590
Os.49318.1.S1_at--469--7991Chr09:22719984..22720008 (25 bp)
GGAGGAACCGTTAATCCATTTGGAT
LOC_Os09g39590
Os.49318.1.S1_at--1039--8911Chr09:22719958..22719982 (25 bp)
TGAGCGCCAGAATATGCTGTTTGTT
LOC_Os09g39590
Os.49318.1.S1_at--8--4691Chr09:22719933..22719957 (25 bp)
GCTCTCCCGAGATCCCTTTTTAGTT
LOC_Os09g39590
Target Sequence 
GAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCAAGATTGGTGATGCTGGCCAAAAGGGCAGCAC
AGGTTCCCAGCAGATTGTGATCGAAGGGCCCCTGTGTGAGGACTATTACAAGATTCGTGAGCTTCTTTACTCTCAGTTCT
ACTTGTTGTAAAATGTAATGGACCGGACCATGGCATCTCTTTCCTTTCGTGTTGATGTTGTTGTACACGGAGGAACCGTT
AATCCATTTGGATNTGAGCGCCAGAATATGCTGTTTGTTGCTCTCCCGAGATCCCTTTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis