Browse Element(s) Details


OsAffx.30211.1.S1_at

Description tigr:9637.m03385
TID=OsAffx.30211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=germin-like protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3952011/11Cupin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30211.1.S1_at--1097--3391Chr09:22697832..22697856 (25 bp)
CAGCACTGACCCTAGTCATGGCCGG
LOC_Os09g39520
OsAffx.30211.1.S1_at--294--3331Chr09:22697829..22697853 (25 bp)
CACTGACCCTAGTCATGGCCGGCGA
LOC_Os09g39520
OsAffx.30211.1.S1_at--1134--9671Chr09:22697793..22697817 (25 bp)
TCACCGACTATGTCATCCCGGCGAA
LOC_Os09g39520
OsAffx.30211.1.S1_at--57--4111Chr09:22697789..22697813 (25 bp)
CGACTATGTCATCCCGGCGAACGGC
LOC_Os09g39520
OsAffx.30211.1.S1_at--269--3931Chr09:22697775..22697799 (25 bp)
CGGCGAACGGCAACCCCATGAACAT
LOC_Os09g39520
OsAffx.30211.1.S1_at--382--1771Chr09:22697728..22697752 (25 bp)
ACCGGCTTCCGCAAGGTGTTCAACA
LOC_Os09g39520
OsAffx.30211.1.S1_at--826--8291Chr09:22697725..22697749 (25 bp)
GGCTTCCGCAAGGTGTTCAACACGA
LOC_Os09g39520
OsAffx.30211.1.S1_at--312--7431Chr09:22697713..22697737 (25 bp)
GTGTTCAACACGAGCAGCGCGCCGG
LOC_Os09g39520
OsAffx.30211.1.S1_at--140--10511Chr09:22697710..22697734 (25 bp)
TTCAACACGAGCAGCGCGCCGGAAC
LOC_Os09g39520
OsAffx.30211.1.S1_at--221--4151Chr09:22697696..22697720 (25 bp)
CGCGCCGGAACCGAACAGCTTCACC
LOC_Os09g39520
OsAffx.30211.1.S1_at--427--9131Chr09:22697358..22697382 (25 bp)
TGCCGGTCACAGTGTTCGGCACCGG
LOC_Os09g39520
Target Sequence 
CAGCACTGACCCTAGTCATGGCCGGCGACCCCGACATCCTCACCGACTATGTCATCCCGGCGAACGGCAACCCCATGAAC
ATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAAGGTGTTCAACACGAGCAGCGCGCCGGAACCGAACAGCTTCAC
CGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCACGCTCGTCTTCCCCCCGA
GCACCGTCAACCCGCCGCACACCCACCCGCGCTCCGCCGAGCTCCTGCTCGTCGTCGACGGCGCGCTCTCCGTCGGCTTC
ATCGACACGACCAACAAGCTCTACACCCAGGACCTGGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTT
CCAATTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGCAGCGCCGCCCCGGGGGTCGTGCCGGTGCCGG
TCACAGTGTTCGGCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis