Browse Element(s) Details


Os.12034.1.S1_a_at

Description gb:AK068829.1
DB_XREF= gi:32978854
TID=Os.12034.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160I10, full insert sequence.
FL= gb:AK068829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3946211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12034.1.S1_a_at--524--6011Chr09:22685643..22685667 (25 bp)
GAGAGCAGTCATGGCTGGCATGATC
LOC_Os09g39462
Os.12034.1.S1_a_at--504--9011Chr09:22685691..22685715 (25 bp)
TGCAGTTCAGTTTTGAGATTCAGGA
LOC_Os09g39462
Os.12034.1.S1_a_at--639--10751Chr09:22685732..22685756 (25 bp)
TTGAAGTCAAGCACTCAGCGCGGGT
LOC_Os09g39462
Os.12034.1.S1_a_at--464--10811Chr09:22685899..22685923 (25 bp)
TTGTCGCTTGCTGAAGCTTCGCCTT
LOC_Os09g39462
Os.12034.1.S1_a_at--712--4431Chr09:22685925..22685949 (25 bp)
GCCTTCCACCTGAAGTGGCGTCAGA
LOC_Os09g39462
Os.12034.1.S1_a_at--131--2871Chr09:22685937..22685961 (25 bp)
AAGTGGCGTCAGATTGACTGGACCG
LOC_Os09g39462
Os.12034.1.S1_a_at--842--5731Chr09:22685952..22685976 (25 bp)
GACTGGACCGAAGATGCAGCGCTGT
LOC_Os09g39462
Os.12034.1.S1_a_at--680--5351Chr09:22685961..22685985 (25 bp)
GAAGATGCAGCGCTGTAGTCCCCAC
LOC_Os09g39462
Os.12034.1.S1_a_at--643--8751Chr09:22685974..22685998 (25 bp)
TGTAGTCCCCACAGTGAACCTAAGC
LOC_Os09g39462
Os.12034.1.S1_a_at--1151--1651Chr09:22685996..22686020 (25 bp)
AGCCCCTCGCTGAGGCTTAATCAGT
LOC_Os09g39462
Os.12034.1.S1_a_at--939--3071Chr09:22686014..22686038 (25 bp)
AATCAGTGTCTGTTATAGATCATTG
LOC_Os09g39462
Target Sequence 
GAGAGCAGTCATGGCTGGCATGATCGGTGCTGTTCTGCTGCTGTTCCNTGCAGTTCAGTTTTGAGATTCAGGAGGGGCAC
ATTGCCCCCTTGAAGTCAAGCACTCAGCGCGGGTGATGAGAAGAGAANTCGGCACAACATCTNAATATGTGGATATTTAT
TCNAGGACGTGCTGCTTGGTNCTTGTCGCTTGCTGAAGCTTCGCCTTCGCCTTCCACCTGAAGTGGCGTCAGATTGACTG
GACCGAAGATGCAGCGCTGTAGTCCCCACAGTGAACCTAAGCCCCTCGCTGAGGCTTAATCAGTGTCTGTTATAGATCAT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12034.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis