Browse Element(s) Details


OsAffx.6534.1.S1_at

Description tigr:9637.m03395
TID=OsAffx.6534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3962011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6534.1.S1_at--690--8551Chr09:22739843..22739867 (25 bp)
TGGATCCAGGATACATTGCTTCAGG
LOC_Os09g39620
OsAffx.6534.1.S1_at--953--7631Chr09:22739867..22739891 (25 bp)
GGGAGCTCACAGCACAGTATGATGT
LOC_Os09g39620
OsAffx.6534.1.S1_at--16--1951Chr09:22739926..22739950 (25 bp)
ACTGGCAAGAGTCCACTAGGCCTTC
LOC_Os09g39620
OsAffx.6534.1.S1_at--795--7611Chr09:22740014..22740038 (25 bp)
GGGAATGGCCACCTGAGTATAGTAA
LOC_Os09g39620
OsAffx.6534.1.S1_at--325--2331Chr09:22740039..22740063 (25 bp)
AAAGTTGGCAATCCTAGCACTGAGA
LOC_Os09g39620
OsAffx.6534.1.S1_at--161--1511Chr09:22740054..22740078 (25 bp)
AGCACTGAGATGTTGCCGGTATGAC
LOC_Os09g39620
OsAffx.6534.1.S1_at--1084--5571Chr09:22740080..22740104 (25 bp)
GAAAGGAGCGCCCTGATCTTGCCAA
LOC_Os09g39620
OsAffx.6534.1.S1_at--511--311Chr09:22740160..22740184 (25 bp)
ATACCATCATTTTTCATCTGCCCAA
LOC_Os09g39620
OsAffx.6534.1.S1_at--571--5311Chr09:22740501..22740525 (25 bp)
GAAGGATCCACATATTGCTGCTGAT
LOC_Os09g39620
OsAffx.6534.1.S1_at--402--2191Chr09:22740607..22740631 (25 bp)
ACACACTACGAGCTGATTCCCAATA
LOC_Os09g39620
OsAffx.6534.1.S1_at--662--51Chr09:22740622..22740646 (25 bp)
ATTCCCAATAATGCCCTTCGTTTTG
LOC_Os09g39620
Target Sequence 
TGGATCCAGGATACATTGCTTCAGGGGAGCTCACAGCACAGTATGATGTCTATTCATTTGGAGTAGTGCTGCTAAGATTG
CTAACTGGCAAGAGTCCACTAGGCCTTCCTAGTGAGGTAGAGGCAGCCCTGAACAATGAAATGCTGCAACAGGTAGTTGA
TGCTTCTGCAGGGGAATGGCCACCTGAGTATAGTAAAAAGTTGGCAATCCTAGCACTGAGATGTTGCCGGTATGACAGAA
AGGAGCGCCCTGATCTTGCCAAGGAGGCCTGGGGTGTTTTACAAGCCATGGTGAACTATCCAGACAACAAATGCAAGATA
CCATCATTTTTCATCTGCCCAATGACACAGGAAATCATGAAGGATCCACATATTGCTGCTGATGGATTCACATATGAAGG
TGAGGCTATAAAAGACTGGCTTCAAAGGGGGCATAAGACGTCCCCCATGACCTACCTCAGTTTCACACACTACGAGCTGA
TTCCCAATAATGCCCTTCGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis