Browse Element(s) Details


Os.53896.1.S1_at

Description gb:AK100675.1
DB_XREF= gi:32985884
TID=Os.53896.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113C01, full insert sequence.
FL= gb:AK100675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3925010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53896.1.S1_at--854--2791Chr09:22547991..22548015 (25 bp)
AAGAGGCTTGGCCATTTCCATGGGA
LOC_Os09g39250
Os.53896.1.S1_at--183--6392Chr06:2139550..2139691 (25 bp)
GATCGCCTTCAATTTTTGCTGTGAG
NONE
Os.53896.1.S1_at--129--7111Chr09:22547886..22547910 (25 bp)
GTCAGTTAAAACTTGCGCCGACGCC
LOC_Os09g39250
Os.53896.1.S1_at--490--7511Chr09:22547839..22547863 (25 bp)
GTGGATTTTCTCTACGAAGGCGTCT
LOC_Os09g39250
Os.53896.1.S1_at--354--8971Chr09:22547794..22547818 (25 bp)
TGAACTGGCCTGATGTACCCTTGTA
LOC_Os09g39250
Os.53896.1.S1_at--1071--2511NONE
AACTTGCTCTAATAGCTTCCGCGAG
NONE
Os.53896.1.S1_at--982--5151Chr09:22547716..22547740 (25 bp)
GCAAGCACTGTGCAACTTCTGGATT
LOC_Os09g39250
Os.53896.1.S1_at--594--71Chr09:22547694..22547718 (25 bp)
ATTGCTAGCTAGGATACTTCGTGTC
LOC_Os09g39250
Os.53896.1.S1_at--865--4911Chr09:22547654..22547678 (25 bp)
GCTTGTTAGCTCTGTTAGTTTCTTC
LOC_Os09g39250
Os.53896.1.S1_at--887--6111Chr09:22547603..22547627 (25 bp)
GAGTGTGATGCTTCTACTGGTGCCA
LOC_Os09g39250
Os.53896.1.S1_at--434--7791Chr09:22547585..22547609 (25 bp)
GGTGCCAGACAGCTCTATATATCTT
LOC_Os09g39250
Target Sequence 
AAGAGGCTTGGCCATTTCCATGGGATACAATATGCAAACCATCAACGGTCGAGGGATTCCACCCACGGTGAAGATCGCCT
TCAATTTTTGCTGTGAGCAGATTTTGTCAGTTAAAACTTGCGCCGACGCCCCGTTTGTGTGGTTGGGGTTTGGTGGATTT
TCTCTACGAAGGCGTCTGAACTTACGGTTTGATAACGTGAACTGGCCTGATGTACCCTTGTAGTACGAATTGGGCTACGT
ACTGTACGTGAAACTTGCTCTAATAGCTTCCGCGAGCAAGCACTGTGCAACTTCTGGATTGCTAGCTAGGATACTTCGTG
TCCCTAAGTAGTCATATGCTTGTTAGCTCTGTTAGTTTCTTCTGCTGCTTTTGTGCCCGATTGTTGTGGAGTGTGATGCT
TCTACTGGTGCCAGACAGCTCTATATATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis