Browse Element(s) Details


OsAffx.24960.1.S1_at

Description tigr:9631.m00341
TID=OsAffx.24960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g392601/11prephenate dehydratase, putative, expressed
LOC_Os06g229701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein
LOC_Os09g39280OsAffx.6532.1.S1_at11/119+22575880..22578007expressed protein
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24960.1.S1_at--494--9515Chr10:22454629..22454649 (21 bp)
TCTCTCGCCGGATTGGATCGAATCA
NONE
OsAffx.24960.1.S1_at--1102--11Chr03:1940067..1940091 (25 bp)
ATTGGATCGAATCACTGGCGCGGAT
NONE
OsAffx.24960.1.S1_at--570--1951Chr03:1940054..1940078 (25 bp)
ACTGGCGCGGATCGAATCACCGGAT
NONE
OsAffx.24960.1.S1_at--682--4551Chr03:1940050..1940074 (25 bp)
GCGCGGATCGAATCACCGGATTGGA
NONE
OsAffx.24960.1.S1_at--985--5231Chr03:1940041..1940065 (25 bp)
GAATCACCGGATTGGATCGAATCAC
NONE
OsAffx.24960.1.S1_at--1005--11Chr03:1940031..1940055 (25 bp)
ATTGGATCGAATCACCGACGCCGAC
NONE
OsAffx.24960.1.S1_at--586--4571Chr03:1939915..1939939 (25 bp)
GCGCTGTCCGCGTCATCTACATCAG
NONE
OsAffx.24960.1.S1_at--621--4651Chr03:1939906..1939930 (25 bp)
GCGTCATCTACATCAGCTCATGGGA
NONE
OsAffx.24960.1.S1_at--1023--391Chr03:1939895..1939919 (25 bp)
ATCAGCTCATGGGAGCTCGCCTCTT
NONE
OsAffx.24960.1.S1_at--258--811Chr03:1939887..1939911 (25 bp)
ATGGGAGCTCGCCTCTTCGCGCGTC
NONE
OsAffx.24960.1.S1_at--466--10451Chr03:1939849..1939873 (25 bp)
TTACCGGCTTCACTCGATACAGAGA
NONE
Target Sequence 
TCTCTCGCCGGATTGGATCGAATCACTGGCGCGGATCGAATCACCGGATTGGATCGAATCACCGACGCCGACGCTCTCTT
CCTCTTGCGATGCTGCCGCCACCGGCAAGCCGACGCCGACGCCGGCAGCGACTGCGGGGACGGGGAAGGACGGCCGTCGT
CCCGCGCTGTCCGCGTCATCTACATCAGCTCATGGGAGCTCGCCTCTTCGCGCGTCGTCGTCTCCCGCCTTACCGGCTTC
ACTCGATACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis