Browse Element(s) Details


Os.19603.1.S1_at

Description gb:AK063286.1
DB_XREF= gi:32973304
TID=Os.19603.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D08, full insert sequence.
FL= gb:AK063286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19603.1.S1_at--824--5491Chr09:22534621..22534645 (25 bp)
GAACACGTACTGATCAAAGCGCATG
LOC_Os09g39210
Os.19603.1.S1_at--247--7011Chr09:22534627..22534651 (25 bp)
GTACTGATCAAAGCGCATGCAGCCT
LOC_Os09g39210
Os.19603.1.S1_at--990--371Chr09:22534633..22534657 (25 bp)
ATCAAAGCGCATGCAGCCTGGGTAA
LOC_Os09g39210
Os.19603.1.S1_at--695--1651Chr09:22534638..22534662 (25 bp)
AGCGCATGCAGCCTGGGTAATCTGT
LOC_Os09g39210
Os.19603.1.S1_at--737--9031Chr09:22534644..22534668 (25 bp)
TGCAGCCTGGGTAATCTGTGGCTTT
LOC_Os09g39210
Os.19603.1.S1_at--896--3891Chr09:22534650..22534674 (25 bp)
CTGGGTAATCTGTGGCTTTTGTGCC
LOC_Os09g39210
Os.19603.1.S1_at--929--1351Chr09:22534727..22534751 (25 bp)
AGAGACTATAGTAATGTGCTTGGAC
LOC_Os09g39210
Os.19603.1.S1_at--1103--3671Chr09:22534732..22534756 (25 bp)
CTATAGTAATGTGCTTGGACGTGCA
LOC_Os09g39210
Os.19603.1.S1_at--638--771Chr09:22534800..22534824 (25 bp)
ATGTCGACAGCATCATGTATCTCTC
LOC_Os09g39210
Os.19603.1.S1_at--82--7231Chr09:22534802..22534826 (25 bp)
GTCGACAGCATCATGTATCTCTCTG
LOC_Os09g39210
Os.19603.1.S1_at--34--10711Chr09:22534912..22534936 (25 bp)
TTGCCTGTGTTAGGCTTGTAATTGG
LOC_Os09g39210
Target Sequence 
GAACACGTACTGATCAAAGCGCATGCAGCCTGGGTAATCTGTGGCTTTTGTGCCTGCATTNTTGCCCNAATGGTAGATAT
GGTTAGACNGGTAGTANCGTAGCTGGCANGAGAGACTATAGTAATGTGCTTGGACGTGCANTGCCNGGAAGANTCTACCN
GATGAGCTTTATGCTGTCANTTTTTCTGATGTCGACAGCATCATGTATCTCTCTGNATCATCANATTGGTGATCTGCCGA
TCCCANTTTCCTGTTANAAAAGGAATCGNTAGGGAACTCGTGTTGTACAGTTNCTCCTAGGTACANTTGCCTGTGTTAGG
CTTGTAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis